LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi09g0970	ATGGAAGACAGAATAGTGAACACAATCGCTGTAATATCAGTGATTACTCTGATCACTTTTGTCGTCATAGCTCACATCGTCATAAAGCATTCCAGAGCCTTCTTCCTCATCTTGGGAGCCGATGTTGCAGTAATCCTTGCAGTATTCTCTTGCCTCATAATCCGATTTCGATACAACCGAAGAAGAAGACTAATAGAATCTCAATATAAATCTGAAGGCAGAGAACTCCGAATAGAATACAGCTTCTTGAGAAAAGTCGCTGGAGTTCCGACCAAGTTCAGATTCCAAGAACTCGAAGCTGCCACCGATGGATTCCAATCGCTACTTGGCCAAGGAGCCTCTGCTTCTGTATTCAAAGGTATTTTAACTGACGGCACATCGGTCGCCGTCAAGAGAATCTCTGGCCAAGAAAGAGGTGAAAAAGAGTTCAAATCGGAAGTTGCAGCCATAGCTAGTGTCCAGCACGTAAATCTTGTGCGCCTGATTGGGTATTGTAACTCTGCAAAAGAACCAAGATTCTTGGTTTATGAGTTCATACCAAATGGATCTTTGGATTCTTGGATATTTCCCAATAGAAGTAACGAGAATCGGAGATTCTCTCGCCGTGGGGTTTTATCATGGAGTTTGAGGTACAGAGTGGCAATTGATGTAGCTAAAGCTCTTTCTTACCTTCACCATGATTGCAGATCGAGGATCCTACACTTAGATGTAAAACCAGAGAATATTCTGATAGATGAGAATTTCAAAGCAGTTGTTTCAGATTTTGGTCTCTCGAAGCTAATGGGGAAAGATGAGAGCGAAGTGATGACAACAGTGAGAGGAACAAGAGGGTATTTAGCGCCAGAGTGGCTATTAGAGCATGGAGTTTCTGAGAAAACAGATATATACAGTTATGGCATGGTACTATTAGAGATAATAGGAGGAAGAAGAAACGTGCGGTTTGTCCAAGATCCGAGGGATAAGATGAAGAAGAAGCCAGAGTATTTTCCGAAGATTGTGAATGAGAAAGTGAGAGAAGGTAAAGAAATGGATATTGTGGATCAAAGGTTGATTGAAAGTGGGGGTGTGGAAGAGAGAGAAGTGAAGAGATTGGTGTATGTAGCCCTTTGGTGTATACAAGAGAGGCCAAGAGTGAGACCAAGTATGAAACAAGTGGTGGATATGCTTGAAGGAAGAGAAAGAGTTGATGAGCCACCTGATACAAGGATGGTTATGGGTAATTTTCTCTCATTGGAAGGAGAAGAAGTAGAAGGATGTGATACTGCTACAAGATTGGCTGATTATGTGGCGAGTCAGAGGGCAATAGCAAATTTGGAATATGGATCAACCTACTCTATGGCAACAACGGTTCTATCTGGTAGATAA	1365	0.4205	MEDRIVNTIAVISVITLITFVVIAHIVIKHSRAFFLILGADVAVILAVFSCLIIRFRYNRRRRLIESQYKSEGRELRIEYSFLRKVAGVPTKFRFQELEAATDGFQSLLGQGASASVFKGILTDGTSVAVKRISGQERGEKEFKSEVAAIASVQHVNLVRLIGYCNSAKEPRFLVYEFIPNGSLDSWIFPNRSNENRRFSRRGVLSWSLRYRVAIDVAKALSYLHHDCRSRILHLDVKPENILIDENFKAVVSDFGLSKLMGKDESEVMTTVRGTRGYLAPEWLLEHGVSEKTDIYSYGMVLLEIIGGRRNVRFVQDPRDKMKKKPEYFPKIVNEKVREGKEMDIVDQRLIESGGVEEREVKRLVYVALWCIQERPRVRPSMKQVVDMLEGRERVDEPPDTRMVMGNFLSLEGEEVEGCDTATRLADYVASQRAIANLEYGSTYSMATTVLSGR	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi09g0970	454	SUPERFAMILY	Protein kinase-like (PK-like)	86	391	IPR011009	-
	Mibi09g0970	454	ProSitePatterns	Protein kinases ATP-binding region signature.	109	131	IPR017441	GO:0005524
	Mibi09g0970	454	FunFam	Putative receptor-like protein kinase	179	397	-	-
	Mibi09g0970	454	Gene3D	Phosphorylase Kinase; domain 1	67	178	-	-
	Mibi09g0970	454	Gene3D	Transferase(Phosphotransferase) domain 1	179	404	-	-
	Mibi09g0970	454	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	232	244	IPR008271	GO:0004672\|GO:0006468
	Mibi09g0970	454	CDD	STKc_IRAK	109	391	-	-
	Mibi09g0970	454	ProSiteProfiles	Protein kinase domain profile.	103	395	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi09g0970	454	SMART	serkin_6	103	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi09g0970	454	FunFam	Putative receptor-like protein kinase	70	178	-	-
	Mibi09g0970	454	Pfam	Protein kinase domain	107	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi09g0970	454	PANTHER	OS07G0415500 PROTEIN	35	401	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi09g0970	Mibi-ChrMibi09	17808326	17809690	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi09g0970	1	401	Receptor kinase-like Gene Family	AT5G20050	64.764	8.92e-180	508

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Mibi09g0970		Pkinase	1.4e-44	CL0016