Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0960 ATGCAATTCGCAAAGCTCGATGACTCTCCTATGTTTCGCAAGCAGATACAATGCCTAGAGGAGGGTTCAGAATCTTTGAGAGAGAGAAGTTTGAAATTTTACAAAGGGTGCAGAAAATACACTGAAGGACTTGGGGAGGCCTACGATGGTGACATTGCATTTGCAAGTGCCTTGGAAACATTTGGTGGAGGCCATAATGATCCCATCAGTGTTGCCTTTGGAGGCCCTGTTATGACCAAATTTACTATAGCCTTGAGAGAAATTGGGACATACAAAGAAGTCCTTCGCTCACAGGTTGAACATATGCTAAATGACAGATTACTCCAATTTGTGAATATTGATTTGAATGAAGTCAAGGAAGCACGCAAGCGTTTTGACAAAGCCAGTCTTATTTATGATCAGGCTCGAGAAAAATTCCTGTCTTTGAGAAAAGGCACAAAAACAGATTTAGCTACTGCTCTTGAAGAGGAGCTTCATAATGCAAGATCTACATTTGAGCAAGCTCGATTTAATCTGGTTACTGCTTTGTCAACTGTTGAAGCCAAGAAGAGATTTGAATTTTTGGAGGCAGTCAGTGGGACCATGGATGCACATCTTCGCTACTTCAAACAGGGGTACGAGTTATTGCACCAAATGGAGCCATATATAAACCAGGTTCTGACATATGCTCAGCAGTCAAGGGAAAGATCCAATTATGAGCAAGCAGCTCTAAATGAAAGAATGCAAGAGTACAAAAGGCAGGTTGATCGAGAGAGTAGATGGTCTTCAAATGGTTCTAATGGGTCGCCTAATGGAGATGGTATACAAGCCATCGGTAGAAGTTCACATAAAATGATAGAGGCAGTTATGCAATCTGCTGCCAAGGGAAAGGTTCAAACAATTCGACAAGGCTATCTTTCAAAGAGGTCTTCAAACTTAAGGGGTGACTGGAAAAGGAGGTTTTTTGTTCTTGATAGTCGAGGAATGTTGTATTACTATCGTAAGCAGTGCAGCAAATCTGGGTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGATTGGTTCTGGGCTCTTGAGCCGATGGCTGTCATCTCATCACCATCATGGTGGGGTACATGATGAAAAGTCTGTGGCTCACCACACAGTGAACCTGCTTACATCAACAATCAAAGTTGATGCAGACCAATCGGACTTGAGATTTTGCTTCAGAATAATTTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCTTCATTGTTGAGTTCTCAGATTCCTGAAAGGTGTCTACCTGCTAGTCCAATGGGAAGTGGTCATAATAGGTCTGCCAGTGAGAGTAGTTCCTTTGAAAGTTCAGATTTTGATCACTCTGCTATAGAAGAATATAAATCAGACAGAGGTCTTGCTTCTGCACATACGGAACGCCCCTCAAGAAGCTTGCAGCAGCAGCAACGAGCATGTATCAAAAGTGAGAAGCCAATTGATGTTTTGCGAAGAGTTTGTGGAAATGAAATATGTGCTGATTGTGGGGCGCCTGAACCTGATTGGGCATCGTTAAATCTTGGTGTTCTTGTTTGCATTGAGTGCTCTGGTGTTCACCGAAATCTTGGTGTACACATATCAAAGGTTAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTGTTTCAGTCACTTGGGAATACTTTTGCCAACTCAGTCTGGGAGGAATTGTTGCAATCAAGAAGTGCCTTTCAGATTGATCTTGTCCCCACAGGCTTAAGTAAGTCCGACAAACCGCAGATTCTCTTCATCAGCAAACCTTGTCAATCTGATTCTTTATCTGTGAAGGAAAAATTCATCCATGCAAAGTACGCGGAGAAGCTTTTTGTTCACAGGCCAAAGGACAATCAATTTCGTCTCTTGGTGGCACAACAGATCTGGGAGGCTGTTCGTTCTAATGACAAAAAAGCTGTGTACCGCTACATTGTTAATTATGAAGTTGATGTTAATGCTGTTTATGAGCAAACGTGCAGCACTTCTTTAACCCTTGCCAAAGTGATGCTATTACAAGAGCAGACAGGCCATGATTACAACTCTGCCTTAGTCGGGAACTCTTTCGACTGGTCCTCCACATTTTTGAATATGGTGGGAGCAAAAGAAGATCAGACCATGAATGATCTTTATGGATGCACCCTACTTCACCTTGCTTGTGAAACTGCAGACATTGGCATGCTGGAGCTCCTCCTTCAGTATGGTGCAAGTATTAATGCCACTGACATGAGAGGCCAAACACCTCTCCATCGCTGCATTGTCAAGCGAAAATCTACATTGTTGAGATTTCTTCTCTCAAGGGGAGCTGATCCTCAAGCTGTCGATGAAGAGGGAAGAACCCCCCTTGACCTCGCTATACAGTTAAACTTCGAAGACAGTGAAGTGCTTGCTTTATTATCTGATTCAAACGGATGA 2493 0.4268 MQFAKLDDSPMFRKQIQCLEEGSESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLNEVKEARKRFDKASLIYDQAREKFLSLRKGTKTDLATALEEELHNARSTFEQARFNLVTALSTVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSGSSSQHSGQRNSSEIGSGLLSRWLSSHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERCLPASPMGSGHNRSASESSSFESSDFDHSAIEEYKSDRGLASAHTERPSRSLQQQQRACIKSEKPIDVLRRVCGNEICADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQIDLVPTGLSKSDKPQILFISKPCQSDSLSVKEKFIHAKYAEKLFVHRPKDNQFRLLVAQQIWEAVRSNDKKAVYRYIVNYEVDVNAVYEQTCSTSLTLAKVMLLQEQTGHDYNSALVGNSFDWSSTFLNMVGAKEDQTMNDLYGCTLLHLACETADIGMLELLLQYGASINATDMRGQTPLHRCIVKRKSTLLRFLLSRGADPQAVDEEGRTPLDLAIQLNFEDSEVLALLSDSNG 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0960 830 Pfam Putative GTPase activating protein for Arf 504 640 IPR001164 GO:0005096
Mibi09g0960 830 Gene3D - 285 438 IPR011993 -
Mibi09g0960 830 Coils Coil 151 171 - -
Mibi09g0960 830 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 647 - -
Mibi09g0960 830 ProSiteProfiles Ankyrin repeat region circular profile. 770 802 - -
Mibi09g0960 830 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Mibi09g0960 830 PRINTS HIV Rev interacting protein signature 532 549 IPR001164 GO:0005096
Mibi09g0960 830 PRINTS HIV Rev interacting protein signature 513 532 IPR001164 GO:0005096
Mibi09g0960 830 PRINTS HIV Rev interacting protein signature 555 576 IPR001164 GO:0005096
Mibi09g0960 830 SUPERFAMILY Ankyrin repeat 657 818 IPR036770 -
Mibi09g0960 830 ProSiteProfiles Ankyrin repeat profile. 737 769 IPR002110 GO:0005515
Mibi09g0960 830 SMART ANK_2a 737 766 IPR002110 GO:0005515
Mibi09g0960 830 SMART ANK_2a 770 799 IPR002110 GO:0005515
Mibi09g0960 830 SMART PH_update 293 430 IPR001849 -
Mibi09g0960 830 CDD PH_ACAP 295 432 - -
Mibi09g0960 830 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Mibi09g0960 830 ProSiteProfiles Ankyrin repeat profile. 770 802 IPR002110 GO:0005515
Mibi09g0960 830 MobiDBLite consensus disorder prediction 246 270 - -
Mibi09g0960 830 MobiDBLite consensus disorder prediction 253 269 - -
Mibi09g0960 830 Pfam PH domain 294 427 IPR001849 -
Mibi09g0960 830 PANTHER CENTAURIN/ARF 3 828 IPR045258 GO:0005096
Mibi09g0960 830 SUPERFAMILY PH domain-like 207 427 - -
Mibi09g0960 830 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Mibi09g0960 830 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Mibi09g0960 830 Coils Coil 227 247 - -
Mibi09g0960 830 Pfam BAR domain of APPL family 6 232 - -
Mibi09g0960 830 ProSiteProfiles Ankyrin repeat region circular profile. 737 768 - -
Mibi09g0960 830 Coils Coil 118 138 - -
Mibi09g0960 830 CDD ArfGap 504 633 - -
Mibi09g0960 830 Gene3D Arf GTPase activating protein 481 645 IPR038508 -
Mibi09g0960 830 ProSiteProfiles ARF GTPase-activating proteins domain profile. 501 646 IPR001164 GO:0005096
Mibi09g0960 830 Gene3D - 646 826 IPR036770 -
Mibi09g0960 830 MobiDBLite consensus disorder prediction 441 462 - -
Mibi09g0960 830 MobiDBLite consensus disorder prediction 447 462 - -
Mibi09g0960 830 CDD BAR_SFC_plant 14 215 IPR035670 -
Mibi09g0960 830 SMART arf_gap_3 501 646 IPR001164 GO:0005096
Mibi09g0960 830 SUPERFAMILY ArfGap/RecO-like zinc finger 501 641 IPR037278 -
Mibi09g0960 830 Pfam Ankyrin repeats (3 copies) 742 825 IPR002110 GO:0005515
Mibi09g0960 830 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0960 Mibi-ChrMibi09 16932931 16941830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0960 513 639 C2H2 Transcription Factor Family AT4G21160 42.188 5.87e-21 93.2