Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0912 ATGGGAAGGGGAAGAGTTGAGTTGAAAAGAATTGAGAACAAGATCAACAGGCAGGTTACCTTTGCGAAGAGAAGGAACGGTCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGTATGCTCAAAACGCTAGAGAGGTACCAGAAATGCAACTATGGAGCACCTGAACCTAATGTCTCTGCAAGGGAAGCCTTGGAGTTAAGCAGCCAACAGGAGTACTTGAAGCTCAAGGCACGTTATGAAGCCCTGCAACGATCCCAAAGGAATCTTATGGGAGAAGACCTCGGACCCCTAAGCAGCAAAGAACTCGAATCACTTGAAAGGCAGCTTGATTCATCCTTGAAGCAGATCAGATCAACACGGACACAATTTATGCTGGATCAGCTCTCTGATCTTCAACGAAAGGAACACTTGCTAGGTGAGGCAAACAGGTCGCTAAGACAAAGGCTGGAGGGATACCAAATAAATCCACTCCAATTGAATCCAACTGCTGAAGAAATGGGATATGGGCGACACCCACATCAACCTCAGGATGATGGCTTCTTTCATCCCTTGGACTGTGAGCCAACCTTGCAAATTGGATCATATCAGGCAGATCCAGTATTAGTTGTTACAGCAGGGCCAAGCGTGAATAACTACATGCCAACAGGATGGTTACCATGA 732 0.4549 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLGEANRSLRQRLEGYQINPLQLNPTAEEMGYGRHPHQPQDDGFFHPLDCEPTLQIGSYQADPVLVVTAGPSVNNYMPTGWLP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0912 243 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Mibi09g0912 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi09g0912 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Mibi09g0912 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mibi09g0912 243 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi09g0912 243 Coils Coil 126 146 - -
Mibi09g0912 243 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Mibi09g0912 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi09g0912 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi09g0912 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi09g0912 243 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi09g0912 243 FunFam MADS-box transcription factor 7 13 98 - -
Mibi09g0912 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi09g0912 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi09g0912 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0912 Mibi-ChrMibi09 15099738 15107445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0912 1 243 MADS-box Gene Family AT1G24260 75.806 6.03e-119 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi09g0912 K-box 4.2e-27 No_clan