Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0903 ATGAGTTTGCTCCATGTGGTTGGATTTGGCCTGAAATTGGGGCATCTACTCTGGGGGCTGTGTTGCTGGATTATATCAGTCATATACATGAACTGGTTGAACAACGGAGGAATTATGGAAACCAAAATTGGGTTTCTTGGTTTTGGTGGCAAGATATGGCTAAAGTGGTGGGAGAAGATCTCAGGCAATAGTTGCAAAATTCATCAACACTACTACAAGCGTATTGGGTCCAAGAAAGTTGGGAGAACTCTGGGGAGGAAGCTTTTGCTGACATGGGTTGTTGGCTGGACCATGGTATCTATGTGGATCTTTTTCTTCATGACCTTGCAAGCTACTGAGAAGAGGAAAGAGACTCTAGCAAGTATGTGTGATGAAAGGGCTAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCTATTCTCATCTCAACCTTCCACCATGCCAAGTCCCCATCTGCCATCGATCAGAGGACATTTGCTAGGTACACAGAACGTACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGATGGACCATTAAGAGGATGGATACTCTTGAGCAGAACCCCATTCATGAGGATGACTATGCCCCTGAAGCATTGGAGCCTTCCCCAGTTCGAGAAGAATATGCTCCTGTCATTTTTGCGCAGGAAACAATTGCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTTTTGCGTGCTAGAGAGTTAGGGAAAGGAGTTTTAACAGCTCCTTTTAGGCTGCTCAAAACAAATCATCTGGGAGTTATCCTCACTTTTGCAGTGTACAACACAGATCTTCCATCAAATGTGACCCCAAATGAAAGGATTCAAGCGACAAATGGGTATCTTGGTGGCGTCTTTGATATTGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGGTTTTATCATGTTAGCTCCCTGAACTTTGGAGATCCTTTCCGGAAGCATGAGATGCACTGCAGGTTTAAACAGAAACCTCCATGGCCATGGTTGGCAATTGCTACATCAATTGGCATCCTTGTTATTGCTCTTCTTGTAGGGCATATTTTTTATGCTACTGTGAATAGAATTGCTAAAGTGGAGGATGATTACCATAAGATGATGGAACTTAAAAAACGAGCTGAAGCAGCTGATGTTGCTAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTTCTTGGGATGTTGCACATGCTTATGGACACAGAGCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTTTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATCCGATCAGTTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATGTGTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCGGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATTAAGTTCACGGATAAAGGGCACATATTTGTCACTGTACATCTTATTGAGGAAGTTGTCAATTCAATTGAAGTTGCAACATCAAAGAATACCTTGAGTGGCTTTCCTGTTGTTGATAAACGTCAGAGTTGGAAAGGATTCAGTTCTGTCAATCAAGATGGACCTCTGGGATCTTTCTCATCTTCCTCCCCTGATCGCATTACTCTTATTGTATCTGTTGAAGACACAGGCGAAGGAATACCTAGAGATGCTCAATCCCGCATCTTCACTCCATTCATGCAGGTTGGTCCATCTGTCTCCAGGAGACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAATGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGAGAGTGTGCCAAAGATAGGATCTACTTTCACATTTACAGCTGTTTTCACCAATGAATCCCCTGGATCAACTGAGGGTATAACCCAGCAAATTAACAACCAACCTAATCTTGCATCCTCAGAGTTTCAGGGCATGACTGCGCTTGTTATAGACCCTAAACCTGTCAGAGCTAACGTGTTGAGATATCACATTAAACGGCTAGGCATTCATGTAGAAATAGCTTCTGATTTAAATCAAGGTTTGTCCTTCATAAGCAATGGGGATATAGTTATTAATATGATCCTAGTTGAGCATGAAGTCTGGGATAGAGATTCTGGTGTTCCATCCCAGTTTATCAATAACATGAGGAAAATTTATCGCACGGTTCCTCCAAAGCTTTTTGTTCTTGTTAATTCTAGTAGCTCGTACAGAACAAGTTCCATAACATTGGGTGTTCATAATCCAACTGTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGAAACAGGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTCCGCCACCTCTTGCGTGGCAGGAAAATCCTTATTGTAGATGACAATAGTGTGAACCGAACAGTAGCAGCTGGAGCTTTGAAAAAGTATGGAGCTGATGTGGTCTGTGTGAACAGTGGAAAAGATGCAATCTCTATGCTGAAACCGCCCCATCAATTTGATGCCTGTTTTATGGATATCCAAATGCCAGAAATGGACGGGTTTGAAGCTACTAGGTTGATTCGGGAGATGGAACACCATGTAAACATAGGAGAAGTGCCTGTGGAAGCCTTGGAGAATACTTCAAACTGCCATTTACCCATTCTGGCTATGACTGCGGACGTGATTCAGGCAACTCATGAGGAATGCCTGAAGTGCGGGATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATCGGGAAGACACTCACAAGCCTGTAAATAGGTTCAGAAGTTTTCTGACAGGAGTGTACATAGGAGCCAAGTTTGATTGA 3129 0.4289 MSLLHVVGFGLKLGHLLWGLCCWIISVIYMNWLNNGGIMETKIGFLGFGGKIWLKWWEKISGNSCKIHQHYYKRIGSKKVGRTLGRKLLLTWVVGWTMVSMWIFFFMTLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPVREEYAPVIFAQETIAHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNHLGVILTFAVYNTDLPSNVTPNERIQATNGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGFYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAIATSIGILVIALLVGHIFYATVNRIAKVEDDYHKMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDIRSVLDDVLSLFSEKSQEKGVELAVYVSDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSIEVATSKNTLSGFPVVDKRQSWKGFSSVNQDGPLGSFSSSSPDRITLIVSVEDTGEGIPRDAQSRIFTPFMQVGPSVSRRHGGTGIGLSISKCLVGLMHGEIGFESVPKIGSTFTFTAVFTNESPGSTEGITQQINNQPNLASSEFQGMTALVIDPKPVRANVLRYHIKRLGIHVEIASDLNQGLSFISNGDIVINMILVEHEVWDRDSGVPSQFINNMRKIYRTVPPKLFVLVNSSSSYRTSSITLGVHNPTVIVKPLRASMLAATLQRAMGVGNRGNPRNGELPSLSLRHLLRGRKILIVDDNSVNRTVAAGALKKYGADVVCVNSGKDAISMLKPPHQFDACFMDIQMPEMDGFEATRLIREMEHHVNIGEVPVEALENTSNCHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREDTHKPVNRFRSFLTGVYIGAKFD 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0903 1042 Gene3D - 880 1026 - -
Mibi09g0903 1042 Pfam His Kinase A (phospho-acceptor) domain 443 508 IPR003661 GO:0000155|GO:0007165
Mibi09g0903 1042 ProSiteProfiles Histidine kinase domain profile. 450 715 IPR005467 -
Mibi09g0903 1042 Coils Coil 420 440 - -
Mibi09g0903 1042 CDD HATPase_EvgS-ArcB-TorS-like 560 713 - -
Mibi09g0903 1042 Pfam Response regulator receiver domain 892 1017 IPR001789 GO:0000160
Mibi09g0903 1042 SMART CHASE_2 156 357 IPR006189 -
Mibi09g0903 1042 Gene3D - 412 506 - -
Mibi09g0903 1042 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 497 710 IPR036890 -
Mibi09g0903 1042 CDD PRTases_typeI 844 919 IPR000836 -
Mibi09g0903 1042 Gene3D - 732 867 - -
Mibi09g0903 1042 PRINTS Bacterial sensor protein C-terminal signature 640 654 IPR004358 GO:0016310|GO:0016772
Mibi09g0903 1042 PRINTS Bacterial sensor protein C-terminal signature 658 668 IPR004358 GO:0016310|GO:0016772
Mibi09g0903 1042 PRINTS Bacterial sensor protein C-terminal signature 675 693 IPR004358 GO:0016310|GO:0016772
Mibi09g0903 1042 Gene3D - 107 159 - -
Mibi09g0903 1042 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 430 509 IPR036097 GO:0000155|GO:0007165
Mibi09g0903 1042 ProSiteProfiles Response regulatory domain profile. 891 1024 IPR001789 GO:0000160
Mibi09g0903 1042 CDD REC_hyHK_CKI1_RcsC-like 892 1018 - -
Mibi09g0903 1042 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
Mibi09g0903 1042 FunFam Histidine kinase 4 160 389 - -
Mibi09g0903 1042 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 713 IPR003594 -
Mibi09g0903 1042 Pfam CHASE domain 159 355 IPR006189 -
Mibi09g0903 1042 SMART REC_2 890 1020 IPR001789 GO:0000160
Mibi09g0903 1042 CDD HisKA 443 504 IPR003661 GO:0000155|GO:0007165
Mibi09g0903 1042 SUPERFAMILY CheY-like 738 866 IPR011006 -
Mibi09g0903 1042 SMART HKATPase_4 555 715 IPR003594 -
Mibi09g0903 1042 Gene3D CHASE domain 160 389 IPR042240 -
Mibi09g0903 1042 SMART HisKA_10 443 508 IPR003661 GO:0000155|GO:0007165
Mibi09g0903 1042 SUPERFAMILY CheY-like 887 1018 IPR011006 -
Mibi09g0903 1042 PANTHER TWO-COMPONENT HISTIDINE KINASE 122 1017 - -
Mibi09g0903 1042 FunFam Histidine kinase 4 415 506 - -
Mibi09g0903 1042 Gene3D - 507 717 IPR036890 -
Mibi09g0903 1042 ProSiteProfiles Response regulatory domain profile. 743 865 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0903 Mibi-ChrMibi09 14966141 14971480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0903 1 1028 Miscellaneous Gene Families AT1G27320 67.844 0.0 1394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mibi09g0903 CHASE 5.7e-37 CL0165