Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0877 ATGGATGTTGCCGAGGTTGAAGAAAATCTGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGCTCTTTCTACAATGTATTGCAAAGTATCGTCCATATTTCCATCTCTAGAAGCAGCTAGACCTAGGAGCAAAGCTGGCATTGAGGCTTTAAGTTCATTGCATGTAGCCCAAGAGAAGGCCAAGAAAGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCCATAACTGCGGATGTTGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTATTAAAGACGGCCTTAACCAGATGGAAGATATTGTCCCGCGATCTATTGCATATCAGTGTCAGGAGATTGTGAATGAACTTAATGGTGTAAAATTTGCAACTGACCCAGTGGAGAAGCAAGTTGGAGCTGATTTAATTGCACTGCTTCAGAAAGGGACACAATGTGGTGACTCTAGTGATGCAAGTGAGCTCGAATGTTTTCACCAGTGTGCTATTAGACTTGGGATCACATCTTCAAGAGAAGCTCTTGCAGAAAGAAGAGCTCTCAAGAAGCTCATTGAAAGAGCCAGGGTTGAGGAAGACAATCAGAAGGAATCAACAGTTGCATATCTTCTCCACCTTATGAGGAACTATTCCAAGTTATTTAAAAGTGAAATTTCAGATGACAATGATTCACAGGGTTCTGCTCCTTGTTCTCCCTCTACTCCTCAAGGATATGTTGAGTTCAGTTTTCCTAATGGACAATGTCAGGCTCTCGAAAGAGAGATTTCGAAATGCTGTTCCATTAATTCAAATCAAATAAGTAGAAAATTGGGACAGATGCCTCTTCCTCCTGAAGAATTAAAGTGTCCAATGTCTTCACAGCTTATGTATGATCCTGTCATCATTGTTTCTGGACAAACTTATGAAAGGGATTGCATAGAGAAATGGTTCAGAGAAGGACACACCACTTGCCCCAAGACTCAACAGAAACTGGATCAGCTTTTGCTGATTCCGAATTACTGTGTTAAGGGTCTTGTCATTTGCTGGTGTGAACAGAATGGAGTTCCTGTTCCTGATGGCCCTCCTGACTCTTTCGATATTAACTTCTCGAGATTGGCTTTATTGGAACCTGAACCAACAAATTCAAAATCTGTGAACAGTTTGAGCTCTTGCAAGTTGAAGAGTATAAAAGTGGTTCCTTTAGAAGAGAGCAGTCTCTCAGAGGAATCCACGGTGGATAGAAAAGAAGAATTGTCTGCACAGGAGGAAAGTACAGAGAAGTTTCTCAGGTTTCAGAAAGTTTTGGTTGAAGAGACTGATTACAACATGAAGTGCGATGTGGTCGAACAGTTAAGGATATTACTGAGGGATAGTGAGGAAGCCAGGGATTATATGGGAGCTCATGGATTTGTTGAGGCACTTTTGCAGTTTCTAAAGTCAGCTGTGTCTGAAGGAAATCTGAAAGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTTGCTGTGAATAACAACAGAAATAAGGCAATCATGTTATCAGCAGGAGTACTACCATTGCTGGAGGAAATTTCAAACTCAAGTTCATATGGTTCTGCAACAGCCCTCTATCTGAATCTCTCGTGCCTTGAAGAAGGCAAGACCAAGATTGGGAAGACTCAAGCTGTCCAGTTCCTAATCCGTCTCCTTCAAGCTGACACCAAAGTCCAATGCAAACAAGATTCACTCCACGCACTCTATAATCTCTCCACTGTCCCTTCAAATATTCCAAACCTCCTGTCATCTGGGATCATTAATGGCCTTCTATCCCTTCTTTCAAGCCAGGGTGATAGTAACAGCATGTGGACAGAGAAATGCATTCATGTTCTGATAAATTTGGCGGCTTCTGATTTGGGAAAAGAGGAAATAATCTCAACCCCAGGACTTATTATTGCACTGGCTAAGAAACTTGAATCTAGTGAGCTCTTAGAGCAAGAACAAGCTGCTTCTTGTCTTTTAATCTTGTGTAATAAGAATGAGAAATTTAGCCACAAGGTCCTAAGAGAAGGTATAATACCTGCATTGGTTTTGATATCAGTAAATGGGACCAAAAGAGGTAAAGAAAAAGCACAGAAACTTTTGATGCTCTTTAAAGAGCAGCAACAACGAGACCCTTCACCAGTTAAGACGCATTTGTGTGCCCCTCCTGCTATTCCTGAACCTAAGAAGAATGTGGATGTGATTCCTAAGCCAGAAATGAAACCTTTGATGAGTATGTCATTGTCTAGAAGAATAATTGAGAAGCCTTTTAGATTTTTCTCCAAAAGCAAGAGTTATTCTCTATATGACGTTTAA 2322 0.4104 MDVAEVEENLFAASDAKLHGEMCKALSTMYCKVSSIFPSLEAARPRSKAGIEALSSLHVAQEKAKKVLQHCSECSKLYLAITADVVLLKFEKAKCAIKDGLNQMEDIVPRSIAYQCQEIVNELNGVKFATDPVEKQVGADLIALLQKGTQCGDSSDASELECFHQCAIRLGITSSREALAERRALKKLIERARVEEDNQKESTVAYLLHLMRNYSKLFKSEISDDNDSQGSAPCSPSTPQGYVEFSFPNGQCQALEREISKCCSINSNQISRKLGQMPLPPEELKCPMSSQLMYDPVIIVSGQTYERDCIEKWFREGHTTCPKTQQKLDQLLLIPNYCVKGLVICWCEQNGVPVPDGPPDSFDINFSRLALLEPEPTNSKSVNSLSSCKLKSIKVVPLEESSLSEESTVDRKEELSAQEESTEKFLRFQKVLVEETDYNMKCDVVEQLRILLRDSEEARDYMGAHGFVEALLQFLKSAVSEGNLKAQESGAMALFNLAVNNNRNKAIMLSAGVLPLLEEISNSSSYGSATALYLNLSCLEEGKTKIGKTQAVQFLIRLLQADTKVQCKQDSLHALYNLSTVPSNIPNLLSSGIINGLLSLLSSQGDSNSMWTEKCIHVLINLAASDLGKEEIISTPGLIIALAKKLESSELLEQEQAASCLLILCNKNEKFSHKVLREGIIPALVLISVNGTKRGKEKAQKLLMLFKEQQQRDPSPVKTHLCAPPAIPEPKKNVDVIPKPEMKPLMSMSLSRRIIEKPFRFFSKSKSYSLYDV 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0877 773 PANTHER U BOX DOMAIN-CONTAINING 23 711 - -
Mibi09g0877 773 Coils Coil 175 195 - -
Mibi09g0877 773 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Mibi09g0877 773 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Mibi09g0877 773 Gene3D - 430 607 IPR011989 -
Mibi09g0877 773 Gene3D - 608 710 IPR011989 -
Mibi09g0877 773 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Mibi09g0877 773 SUPERFAMILY ARM repeat 418 706 IPR016024 -
Mibi09g0877 773 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Mibi09g0877 773 SMART arm_5 539 580 IPR000225 GO:0005515
Mibi09g0877 773 SMART arm_5 455 499 IPR000225 GO:0005515
Mibi09g0877 773 CDD RING-Ubox_PUB 286 326 IPR045210 -
Mibi09g0877 773 SUPERFAMILY RING/U-box 280 356 - -
Mibi09g0877 773 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Mibi09g0877 773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0877 Mibi-ChrMibi09 13763908 13767653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0877 1 771 U-box Gene Family AT1G24330 60.305 0.0 887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0877 09 13763908 13767653 Mibi09g0877 09 13763908 13767653 ECH