Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0850 ATGGCTTTCTTGGATTTACTCATAGGAACTTCTAGTAACGCTTTGAGTATGATTGCCACGTATGATGTTGCCATAAATGATACAGCATCGTGGAGGCCGCCATTAATGGAGCACGATGGATTCTGGGAAGGATTCAGGTTAGCACAAGCGGATCAAACCGAAAATGTCGACTTACCTTTTAGCTACTATGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCTCGATATAGCAGTAAAAGCAAGACGTGTAGGCGGATCGACTCATCAAGAAATTTCATTCCTCAATTCACATCTGGCTTCCTCTGCAACCTCTCATTCTTCTTCTATTTTCACTGTTCGGAGGGTTTTTCGAACTTTCATGGCTTCCATTGCAGGATCTAATTGTGTTGCTTTCAAAACCCCCGTCGTTTCGCTTAAGTTCGGAGGCTTTTCTAACAGCAAAGTCGCTCAACTTCATGTAAACCAGCTTCGGTCCCTTTCTGGAATTCATTGCAGATCCAACAGATCGTTTGGATCCTCTGCTATAAGAGCTCAGGCTGCCACTCTTGAAGAAACAGGAACTGGAACTGCCCAAAATGTTGAAGCACCTGTTGTTGTAGTGACTGGAGCCTCCAGAGGTATTGGTCGGGCAATTGCATTGTCTTTGGGTAAAGCTGGTTGTAAGGTCCTTGTTAATTATGCAAGATCATCCAAAGAGGCAGAGGAGGTGTCTAAGCAGATTGAGGCATATGGCGGACAAGCTCTTACATTTGGGGGAGATGTTTCTAATGAGGCAGATGTGGAGACTATGATTAAAACTGCAGTTGATGCTTGGGGAACTGTTGATGTGTTGGTAAACAATGCAGGAATCACTAAGGATGGTTTGTTAATGAGAATGAAAAAATCTCAATGGCAGGATGTTATTGATCTCAATCTCACTGGTGTTTTTCTTTGTACCCAAGCAGCTGCTAAAATTATGATGAAGAAAAGGAAGGGAAGGATAATCAACATTGCATCAGTTGTTGGTTTAGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAGGCAGGAGTAATTGGCCTAACAAAAACTGTTGCAAGGGAATATGCAGGCAGAAACATCAATGTCAATGCTGTTGCTCCAGGTTTTATTGCATCAGACATGACTGCTAAACTTGGAGACGATATCGAGAAGAAAATTTTGGAGTCAATCCCCTTAGGAAGATATGGACAACCAGAAGAAGTAGCTGGACTGGTGGAATTCTTGGCTCTTAATCCTGCCGCCAGTTACATCACTGGACAGGTGTTAACTATTGATGGAGGAATGGTGATGTAA 1335 0.4262 MAFLDLLIGTSSNALSMIATYDVAINDTASWRPPLMEHDGFWEGFRLAQADQTENVDLPFSYYETNPLSVLRQAIRGVTLDIAVKARRVGGSTHQEISFLNSHLASSATSHSSSIFTVRRVFRTFMASIAGSNCVAFKTPVVSLKFGGFSNSKVAQLHVNQLRSLSGIHCRSNRSFGSSAIRAQAATLEETGTGTAQNVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEEVSKQIEAYGGQALTFGGDVSNEADVETMIKTAVDAWGTVDVLVNNAGITKDGLLMRMKKSQWQDVIDLNLTGVFLCTQAAAKIMMKKRKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAREYAGRNINVNAVAPGFIASDMTAKLGDDIEKKILESIPLGRYGQPEEVAGLVEFLALNPAASYITGQVLTIDGGMVM 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0850 444 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 203 444 IPR036291 -
Mibi09g0850 444 Pfam Enoyl-(Acyl carrier protein) reductase 208 442 - -
Mibi09g0850 444 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 198 443 - -
Mibi09g0850 444 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 201 444 - -
Mibi09g0850 444 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 338 366 IPR020904 GO:0016491
Mibi09g0850 444 CDD BKR_SDR_c 203 443 - -
Mibi09g0850 444 Gene3D - 201 443 - -
Mibi09g0850 444 PRINTS Glucose/ribitol dehydrogenase family signature 203 220 IPR002347 -
Mibi09g0850 444 PRINTS Glucose/ribitol dehydrogenase family signature 278 289 IPR002347 -
Mibi09g0850 444 PRINTS Glucose/ribitol dehydrogenase family signature 372 389 IPR002347 -
Mibi09g0850 444 PRINTS Glucose/ribitol dehydrogenase family signature 405 425 IPR002347 -
Mibi09g0850 444 PRINTS Glucose/ribitol dehydrogenase family signature 325 341 IPR002347 -
Mibi09g0850 444 PRINTS Glucose/ribitol dehydrogenase family signature 351 370 IPR002347 -
Mibi09g0850 444 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 331 339 IPR002347 -
Mibi09g0850 444 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 278 289 IPR002347 -
Mibi09g0850 444 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 351 370 IPR002347 -
Mibi09g0850 444 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 202 382 - -
Mibi09g0850 444 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 204 443 IPR011284 GO:0004316|GO:0006633|GO:0051287
Mibi09g0850 444 SUPERFAMILY Ribosomal protein S7 62 95 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0850 Mibi-ChrMibi09 12868546 12878718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0850 152 444 Acyl Lipid Metabolism Gene Families AT1G24360 68.317 2.98e-151 430