Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0820 ATGGACAGTGGTTTCTCTTCTCCGCGACGTGACGCTTTCCCAGCTGGTCTGCGAGTTCTCGTTGTTGATGATGACCCAACTTGGATCAGGATCCTCGAAAAGATGCTCAAGAAGTGCTCCTATGAAGTGACCACATGTGGTTTAGCAAGGGAGGCTCTGAACTTACTTCGAGAAAGAAAAGATGGATACGATATTGTTATCAGTGATGTGAACATGCCAGACATGGATGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTTATAATGATGTCTGTTGATGGAGAAACTAGCAGGGTGATGAAAGGTGTTCAACACGGAGCATGTGATTATCTCCTCAAGCCGATTCGAATGAAAGAACTGCGAAACATATGGCAACATGTGTTCAGAAAGAGAATTCATGAGGCAAGGGAATTTGAAGGCCATGAAGGATTTGAAGCGATTAATTTAATGAGAAATGGATCAGATCACTCCGAAGATGGGATGTTGTTTGCCCTTGAAGATATGACCTCCATGAAGAAAAGAAAAGACCTTGATAACAAACATGATGACAAAGAATTTGGAGATACATCGTCCACCAAGAAAGCCAGAGTAGTTTGGTCTGTTGATCTTCATCAGAAATTTGTCAAAGCTGTGAATCAAATTGGATTTGACAAAGTTGGCCCCAAGAGAATTCTAGATTTGATGAATGTTCCTTGGCTGACAAGAGAAAATGTTGCTAGCCATTTGCAGAAATACCGGCTCTACTTGAGTAGGTTGCAGAAAGAAAACGATCAGAGATCTTCCTCAAGTGGGATCAAGCCTTCAGATTTGGCTCCAAGAGACACTTCAGGAAATTTTGGATTTCAGAACTTAACAAACAAGCAACAAAATGATGTTGCAGCTGACAGCTACAAATATTCAGATGTAACATTACAGAGTCATACCTCAGAGGCTAAGATTCATGACGGCGATCTCAAGGCCATTGTCTCAGATTCCACAGCAGAAAAAAGAAGAGGTTTGTCTGGTAGCATTCCTGATTCAAAGGTAAGTCCCCAGATGAGTCTTAACCATTCTTCTTTTGGACCTCTTGAGTCAGAAGGAAGGCATGCCATAGTCGATTGCACCATCCCATCGACACAGTTTAAGTGGAGTGAACCTCCTCCAGAAATGCCACTCAAGACAGAACACAAGCCATTTCTTCAATTAGAAGATAGCTTCAATAAGTTACCATTAGACGTCACACAGCACAAGATTCAGGTTGACCAATCACATTCGGTTGCTTCGGTTAATTCGAACCCATGTATCAGAGAGGGAGAGATTGCTGCCTCTGTTGAAACTAAGCCGATGTATGCTGATTACAAAAGTGATTATGCCAGTCCTGTGAGTTCAATAGGGAGTGTAGTGGATACCTTTCCTACTACTCAGTCCAAGAGCCTTATGGAGAATGGTCAACTTTCAGAACCTACTTCAACTAAGAATTTGGCCATTATAACTCAGGGCTTCAATCTAGGCTACAATTCTGACCTCGAATGTTACCCCGAAAACCTATTGGATGAGGACTTACATTTCTATTGGTTGCAAGGTGAATGCTATAATATGAATTGGGGGTTGGAGAATATAGTAATGCCAGAGTGTTTTGATCCAGGTCTTGTTGCTGAACTTTCAAGTCACCTGCATGATTCAGCAGATTATACTCTTATAGATCAAGGCCTATTCATAGCATAA 1719 0.4171 MDSGFSSPRRDAFPAGLRVLVVDDDPTWIRILEKMLKKCSYEVTTCGLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFEGHEGFEAINLMRNGSDHSEDGMLFALEDMTSMKKRKDLDNKHDDKEFGDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKRILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQRSSSSGIKPSDLAPRDTSGNFGFQNLTNKQQNDVAADSYKYSDVTLQSHTSEAKIHDGDLKAIVSDSTAEKRRGLSGSIPDSKVSPQMSLNHSSFGPLESEGRHAIVDCTIPSTQFKWSEPPPEMPLKTEHKPFLQLEDSFNKLPLDVTQHKIQVDQSHSVASVNSNPCIREGEIAASVETKPMYADYKSDYASPVSSIGSVVDTFPTTQSKSLMENGQLSEPTSTKNLAIITQGFNLGYNSDLECYPENLLDEDLHFYWLQGECYNMNWGLENIVMPECFDPGLVAELSSHLHDSADYTLIDQGLFIA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0820 572 MobiDBLite consensus disorder prediction 329 362 - -
Mibi09g0820 572 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Mibi09g0820 572 SMART REC_2 17 129 IPR001789 GO:0000160
Mibi09g0820 572 FunFam Two-component response regulator 195 258 - -
Mibi09g0820 572 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Mibi09g0820 572 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Mibi09g0820 572 MobiDBLite consensus disorder prediction 261 290 - -
Mibi09g0820 572 CDD REC_typeB_ARR-like 19 133 - -
Mibi09g0820 572 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Mibi09g0820 572 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Mibi09g0820 572 MobiDBLite consensus disorder prediction 343 359 - -
Mibi09g0820 572 FunFam Two-component response regulator 17 180 - -
Mibi09g0820 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 310 IPR045279 GO:0009736
Mibi09g0820 572 SUPERFAMILY CheY-like 16 141 IPR011006 -
Mibi09g0820 572 Gene3D - 17 190 - -
Mibi09g0820 572 Gene3D - 195 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0820 Mibi-ChrMibi09 11712838 11716929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0820 11 265 Response Regulator Gene Family AT2G25180 55.039 1.22e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mibi09g0820 Response_reg 2.1e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0820 09 11712838 11716929 Mibi09g0820 09 11712838 11716929 ECH