Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0804 ATGGCACTTTTATTGCTGTTTATATTCCATTTCTTGCGTCATATTTTTCTTGCCCCTACTCTCATTTCTTCTCATCCTCTTCAAGATCCTGAACTTGTGATCCAGCAAGTTGAAAGAAGCGTCAATGCCTCCAGGAGAAATCTGGGGTTTGTTTCTTGTGGAACAGGCAACCCCATTGATGATTGCTGGAGATGTGATCCCAACTGGCACCAAAATCGCCGGCGTCTCGCTGATTGTGCCATCGGCTTCGGCAGACACGCCATCGGAGGAAGAGACGGCCGAACATATGTGGTCACCGACCCCGGCGACCACCCCATGAACCCTAAACCTGGAACCTTAAGATTTGGTGTCATCCAAAAAGAACCCTTATGGATCATCTTCGAAAGGGACATGAACATTAAGCTCAATATGGACCTCCTAGTCAATTCCTTCAAAACAATAGACGGCCGAGGAGCCACCGTACACATTGCCGGAGGACCATGCATTAAAATACAGCAACAAAGTAACATTATCATTCATGGCTTGCACATCCATGACTGTGTACGAGGGAATTCTGGGTTTGTGAGGGTATCCCCTAACCATTATAGGTTCAGTACGAGGTCGGACGGGGATGGGGTTTCGATCTCCGGCGGGACCCACGTGTGGGTGGACCATTGTTTTTTGTCTAGGTGCTTTGATGGGTTGATTGATGTGGTTCATGGATCAACAGGGATCACCATTTCGAATAATTATATGACAAACCATGAAAAAGTCATGCTTTTGGGACACAGTGATTCCTATGTGAAGGACCGGAATATGAGGGTCACTGTGGCCTACAATCATTTCGGAGAAGGTCTTGGAGGAAGAATGCCCAGGTGCAGGTTTGGATACTTTCATGTGGTGAACAACGATTACACTCATTGGAAACATTATGCAATAGGAGGGAGCTCGAATCCCACTATTTTCAGCCAAGGCAACCGATTTCTTGCTCCGGATGATGGAGAACACAAAGAGGTGACAAAACACTTTGAGGCATCACAGAGTGAGTGGAAAAGATGGAATTGGAAGTCGGAAGGAGATTTAATGTTGAATGGTGCATTCTTCAGATCATCTGGGGAAGAAGCTTCTTCTGTGTATAGTAAGACGTTAAACTTGGCTGCTAGACCATCTGAGTTTGTGAGCTCAATAACCTCTGGAGCTGGACCTCTTGATTGCAGAAAGGGCTCATTTTGCTGA 1215 0.4617 MALLLLFIFHFLRHIFLAPTLISSHPLQDPELVIQQVERSVNASRRNLGFVSCGTGNPIDDCWRCDPNWHQNRRRLADCAIGFGRHAIGGRDGRTYVVTDPGDHPMNPKPGTLRFGVIQKEPLWIIFERDMNIKLNMDLLVNSFKTIDGRGATVHIAGGPCIKIQQQSNIIIHGLHIHDCVRGNSGFVRVSPNHYRFSTRSDGDGVSISGGTHVWVDHCFLSRCFDGLIDVVHGSTGITISNNYMTNHEKVMLLGHSDSYVKDRNMRVTVAYNHFGEGLGGRMPRCRFGYFHVVNNDYTHWKHYAIGGSSNPTIFSQGNRFLAPDDGEHKEVTKHFEASQSEWKRWNWKSEGDLMLNGAFFRSSGEEASSVYSKTLNLAARPSEFVSSITSGAGPLDCRKGSFC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0804 404 FunFam Pectate lyase 56 397 - -
Mibi09g0804 404 SUPERFAMILY Pectin lyase-like 57 395 IPR011050 -
Mibi09g0804 404 Gene3D - 56 397 IPR012334 -
Mibi09g0804 404 SMART amb_all 130 327 IPR002022 -
Mibi09g0804 404 Pfam Pectate lyase 141 321 IPR002022 -
Mibi09g0804 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Mibi09g0804 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Mibi09g0804 404 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Mibi09g0804 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Mibi09g0804 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Mibi09g0804 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Mibi09g0804 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Mibi09g0804 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Mibi09g0804 404 PANTHER PECTATE LYASE 18-RELATED 29 402 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0804 Mibi-ChrMibi09 11118450 11121226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0804 16 404 Polysaccharide Lyase AT5G63180 68.274 0.0 550