Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0780 ATGTTGCTAGTAATAGCCCTGAGTCTCCACCATAGTTGCCATGCACAAGCATCCACATGGCCAGGCACAACCTTAAAAGAAGCCCTCAACAAAACCCACTTCAGCTACATCCTCATTGCCTTCCTCTTCTTCATCGTCTTCTTCATCTTCTTCTCCCTCTTAATCCGCCACTGCGTCGACACCTGCGCCGCCGCCTCCGTCCACATCTCCCCCTCCGCCGCCGCCGCCGACCGGCGCCGTCAGGCCATCGAAAAATGCCCCGTTTTCGCCTACTCCGAGGTCAAGGACCGCATGATCAGAAACTCGGCCCTCGAATGCGCCGTTTGCCTCACCGAATTCGACGACGCCGATGATAAAATCCGCTTGCTCCCCATTTGTAACCACGTTTTTCACATGGATTGTATTGATAGGTGGTTGTCTTCACGCCTTACCTGCCCCGTTTGCCGCGCCAAGTTCTCTCCGGCGGACCCCTCCGAGCCGGACAATCCCGACGACGGCTCGCCGGAATCTTCACAGTCGCCGGCGCCGGCGCCGGAGGAGTCGCCGGAGACGACGGGGGCGATTGGGGCGGATGATGAGGGAGGGAGTGGCGGTGGTATTGGGCCTCGGGTCGGGCCGGGGGCAATTGGAGTGGGTGATGAGGGCGGTATTGGGCCTCAAGTTGGGCCTGGGCCGGCAGCGGGGAGGCTTGGGAGGTCGCATTCGACGGGTCGTTGTCGGGTCATGGAAAGTGAGGGGGTGATGGAGAGGTATACATTGAGATTGCCTGAGCATGTGAGGGAAGAGATATTTAGGAAAGAGGATAGGAGGAGGTTATTAAGACGTTGTGGGAGTAGCAGCGACGTCGTTTTGAGGGGAGAATGGGATTTAAAGGTTGGATGTGATTATAAAATGGAGAGGTGGGTTTTGATGTGCAATAATATGACATCATCATTGGATTGGAGCTCTGTGAAATTTTTGAAGATGAATGATAGTAATCACTATACTGATCAAAGTTCATTCTCATCATCTTCATCTTCATCAAGTAGGCCTCCGGTTTGA 1041 0.5456 MLLVIALSLHHSCHAQASTWPGTTLKEALNKTHFSYILIAFLFFIVFFIFFSLLIRHCVDTCAAASVHISPSAAAADRRRQAIEKCPVFAYSEVKDRMIRNSALECAVCLTEFDDADDKIRLLPICNHVFHMDCIDRWLSSRLTCPVCRAKFSPADPSEPDNPDDGSPESSQSPAPAPEESPETTGAIGADDEGGSGGGIGPRVGPGAIGVGDEGGIGPQVGPGPAAGRLGRSHSTGRCRVMESEGVMERYTLRLPEHVREEIFRKEDRRRLLRRCGSSSDVVLRGEWDLKVGCDYKMERWVLMCNNMTSSLDWSSVKFLKMNDSNHYTDQSSFSSSSSSSSRPPV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0780 346 CDD mRING-H2-C3H2C2D_ZSWM2 105 149 - -
Mibi09g0780 346 SMART ring_2 106 148 IPR001841 -
Mibi09g0780 346 SUPERFAMILY RING/U-box 83 159 - -
Mibi09g0780 346 ProSiteProfiles Zinc finger RING-type profile. 106 149 IPR001841 -
Mibi09g0780 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 155 IPR013083 -
Mibi09g0780 346 FunFam E3 ubiquitin-protein ligase ATL6 68 155 - -
Mibi09g0780 346 MobiDBLite consensus disorder prediction 153 235 - -
Mibi09g0780 346 MobiDBLite consensus disorder prediction 164 179 - -
Mibi09g0780 346 Pfam Ring finger domain 105 149 IPR001841 -
Mibi09g0780 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0780 Mibi-ChrMibi09 10484662 10485702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0780 37 265 Rapid Response to Elicitors AT2G35000 34.008 1.97e-30 117