Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0776 ATGAAGAAAGCCTATCGACCCATTTCCCACATGGGTTTCCCGCGAAACCCACAATTCCATCGAAATTTTCACCCTCCCTCCAATTTCCGTCCCTATTCGAAACCTGAATTTCGCCCCAACCAACGCCTAAATCATCCCCCAGAAAACTTCTCCCATATCCGGCGACCTAATTTCGTCATTTTACTCCGTTCTTCTCGCCGTGACTTCACAAGGGCCGAAATCGAGGCCTTGATCGCAAAATGTAAGCCAAAGGCCGAAACTTTCAGTGTCTTTCCCGGTGATCATGTCGCCGCACGCCTTAATTTCTTTCAGTGGTGTGATGCTCTCGAGGGTTTTGTTTTCTTTTGGGAGTTTTGTCTCAATGAAGAAGTTCATGGCTTTGTACCTGAGCTCATTTCTCACGTTCTTGTTCCTTCTGACATGGACGAGCTTCGTGACCGGCTTCGTGTTATTTTTGCTGGTCATGTGAAGGGGTTATTGGAAGGGAAGGAAGTTAAGAGATGGCGTGGGGAAAGTGAGCGTGTAACGAAGGAGCTTGCGCACTTAGCGTATTTACTCAAGAAACCGAAATCATTTGGTGTCGTGGAAGGGCTAAGGGATAAGAGAAAAGGGTTGGAGTCAGAGAAAGAGTTGATTGAAAGGAGAATAAGGGAGTTTCAGTCTGCTATGGGGTGTATGTTGCGGTATCTTGAGGATGGCAAGGTGGATGATGAGGTTGGCTTTTCTGTTTTTGGGAAATTGAAGTTTGATGAAACTTCGGAATGGAGGCGTATACATAGGATGATAATGCGTGAGTGTCGTAGACTTGAGGAGGGATTACCCATTTATGCTTACAGGAGCGATATTCTTCAGACAATACATTCTCAGCAGATAATGGTCTTAGTTGGAGAGACTGGCTCTGGTAAGAGTACACAGTTGGTACAGTTTCTTGCTGATTCAGGCATTGGTGCTAATGAATCCATTATATGCACTCAGCCTCGGAAGATTGCTGCCAGATCATTGGCACTGAGGGTACAGGAAGAAAGTAGTGGTTGCTATGGAGACAATTCAGTCAAGTTTTATCCAACATTTTCATCCGCGAATGAGTTCAATTCTGGAATAATATTCATGACAGACAACTGTCTATTGCAGCAGTACATGAGTGATGATAATTTGTCTGGGATCTCATGCCTTGTAATTGATGAGGCTCATGAAAGGAGCCTAAATACGGATCTACTGTTGGCATTGATAAAGAGTTTGCTCTGTAGGAGGTTTGAAATGCGGCTTGTCATTATGTCTGCTACAGCTGATGCAAAGCAGCTATCTGATTATTTTTATGGTTGCGGAATATTTCATGTCGTAGGGAGGAACTTTCCGGTTGACGTGAGGTATGTTCCATCTGCTTATGCAGGACAGTCTGGTCCTACCACTGTTGCCCCATATGTTTCTGATGTAGTGAGAATGGCAACTGAAGTTCACAGAACAGAGAAAGAGGGAACAATTCTTGCCTTTCTGACTTCACAGATGGAGGTAGAATGGGCTTGTGATAAGTTTGAAGCTCTCTCTGCTGTTGCTTTGCCCTTACATGGCAAGCTTTCGCCTGAAGAGCAGCTATGTGTTTTCCAGAACATTCCTGGAAAAAGAAAGGTGATATTTGCAACTAATCTTGCTGAGACATCGCTTACAATTCCTGGTGTCAAGTATGTCATAGATCCTGGGTTTATGAAAGATAGCCGATATGAACCTGGCAGTGGAATGAATGTACTTAAAGTTTGTTGGATTAGCCAAAGCTCTGCTAATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTAGATGCTATAGACTCTACTCAGAATTTGATTATAATTCTATGGCACCAAATCAAGAACCTGAAATTCGACGAGTTCATCTTGGTGTGGCAGTGTTGAGGATACTTGCCTTGGGAGTGAAGAATGTGCAGGATTTTGATTATGTTGATGCTCCAAGTCCTAGCTCTATTGATATGGCAATAACGAATCTAATTCAATTAAAAGCAATTAGATTGAACAAAAATAATTATGAATTAACTGAGGACGGCAGGTACTTGGTAAAAATGGGCGTTGAGCCTAGGCTTGGAAAACTTATTCTTTGCTGTTGCCAGTATGGTTTGGTCAAAGAAGGCCTTACTCTTGCAGCAGTGATGGCCAATGCCAGAAGCATCTTTTGCAGAGTAGGAAATGAAGGTGACAAACGGAGATCTGATTGTCGGAAGGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTCTATCTGTGTACAAGGAATGGGAATCCTTGCCCCGAGAGAGGAAAAACAAATGGTGTTGGGAAAACAGTATTAATGCAAAGTCCATGAGGAGGTGCCAAGACACCATTAAGGATTTGGAATCTTGCCTTGAGTATGAGCTTGATGTTGTTGCCCCGAGCTACTGGCGCTGGGATCCTCACAACTCTTCTGATTGTGATAAGTGTCTAAAAATGGCTATACTGTCCTCACTTTCTGAGAATGTAGCCATGTACTCTGGATGCCATCAAATTGGTTATATAGTAGCACTAACTGGGAAGCTTGTTCAACTGCATCCATCTTGTTCGTTGCTAGTATTCTCTGAGAAACCTAGCTGGGTTGTTTTTGGCGAGATACTGTCTGCTTCGGGTCAATATTTGGTCTGTGTGAGTTCTTTTGACTTTGATGCATTATGCACCCTTGACCCTCCTCCATTGTTTGATGTATCTGAGATGGAAGAAAAGAAGCTGCAAATGAAGGTGTGGACTGGTCTTGGCTGTATTCTTCTCAAGAGATTTTGTGGGAAAGGAAACTGTAATATGCTTGGTCTTGTGTCGCGCATAAGAACAGCTTGCAAGGATGAGCGTATCTTCATTGAAGTCAATGTTGACCAGAATGAAATTCAGCTTTACTCCTCCTCACATGACATGGAATTGGCCATTGCAATGATTAATGAGGCTCTGGAATATGAGAGGAAATGGCTGCATACCGAATGCTTGGAGAAATGTTTGTATCATGGGTCTGCGGTCTCATCTCCATTAGCTTTGTTTGGATCTGGTGCTGAGATAAAGCATTTGGAAGTTGAAAACCAGTGCTTGAGTGTTGATGTATGTCATCCAAATGTAGGTGCATTTAATGATAAGGATCTTTTGATGTTCCTTGAAAAGAATTCTGTAGGTTCTATCTGTGCTGTGCACAAGTTTACCAATGTGGCGCCGGATGCTGAAGACAGAGAGAAGTGGGGCAGGATATCATTTCTCTCCCCTGATGCGGCAAAAAGAGCTACTGAGCTAGATGGAAAGGAGTTTCATGGCTCATCCTTGAAAATAGTTCAATCACAGGCAACTAGTGGAGGGGATAAAACATATCCATTCCCTGCTGTTAAAGCTAAATTATGTTGGCCACGTAGACTTAGCAAGGGATTTGGCATTCTTAAATGTGAAATAAGGGATGTTCATTTAATCTTGAAAGATTTTTATAACCTTGCGATAGGAGGGAGGTATGTTCGTTGTGAAGCTGGCAGAAGGGGCTTGGATAGTATTGTGATCGGGGGACTTCATAAAGAACTCTCAGAAGCTGAAATCTTAGATGTACTAAGTACTGCTACAAGTAGGAGGATTGTGGATTTTTTCTTGGTGAGAGGAGATGCTGTTGGGAATCCCCCATGCAATGTTTGTGAGGAGGCTCTCCTTAAAGAAATATCTCCCTTTATGCCTAAAAGGCACCCCCACAGTTCTTCTTGCCGTGTTCAGGTGTATCCACCTGAACCAAAGGATGCTTTCATGAGAGCTTTGATCACTTTTGATGGAAGATTACATTTGGAGGCGGCAAAGGCTTTGGAGCAAATTGAAGGGAAAGCATTGCCTGGTTGTCTTGCTTGGCAGAAGATAAAGTGCCAGCATTTGTTTCATAGCTCCTTAATATTTCCTTTACATGTTTATCGTGTGATCAAGGGACCATTGGATAAGCTACTTGCTAGCTTCAGCTGTATAAAGGGTCTTGAGTGGAACCTAGAAATGACTGCTAATGGCTCCTACCGTATCAAAATAACAGCTAATGCCACAAAGACTGTGGCAGAAGTTAGGAGACCTCTTGAAGAACTTACAAGGGGGAAAACCATTGTCCACGCAAGTCTCTCCCCTCCGGTTCTACAACTGCTACTGTCCAGAGATGGCATTAATCTTAAAATCTCAGTACAGCAAGAGACGGAAACGTTCATTCTTTTTGACAGGCATAACCTGACTTTGCGGGTATTTGGTTCCCCAGATAAGGTTGAGTTGGCCCAGCAGAAGCTAATTCAGTCTTTACTCACTCTCCATGAAACCAAGCAGTTAAATGTCCACCTCCGAGGGAAAGACTTACCTCCTGATTTGATGAAGCAAGTGGTTAAGAATTTTGGGCCAGATCTTCATGGGCTGAAAGAGAAGATACCAGAGGCAGACTTTACTCTCAACACCCGACGGCAAGTAATCTATGTTCGTGGTAAAATGGAGGTGAAACCAAAAGTAGAGGAATTAATACATGAAATTGCTCGTTCAAGTAGTCATTTGGCTGAGAGACCTGGGGCTGGACTGGACTGCCCAATTTGCTTGTGTGAAGTGGAGGATGGCTACCAGCTTGAAAACTGTGGACATTTGTTCTGTCGAGTGTGTCTGGTGGAGCAATGTGAATCTGCCATAAGAAACCGAGGCGATTTCCCTATATGCTGTGCACATTCGGGTTGTGTGGATCCCATTCTGCTTGTCGATTTGAAAGCTCTTTTATCTAGCGAGAAGTTAGAGGAATTATTTAGAGCCTCTTTGGGAGCTTTTGTAGCTTCTAGTGAGGGCAAGTACAGGTTTTGTCCATCTCCTGATTGTCCCTCCATTTATCGAGTTGCTGGTCCTGAGGCAGCCGGTGAGCCATTCGTCTGTGGAGCATGTTATGCAGAGACATGTACACGGTGTCACTTGGAATATCATCCGTACATTTCATGTGAGAGATACAAGGAATTCAAGGAGGATCCAGACTCATCCCTCAAGGAGTGGTGCAAGGGGAAAGAACATGTCAAGACCTGCCCTGTATGTGGCTATACAATTGAGAAGGTAGATGGGTGCAACCACATTGAGTGCAAGTGTGGGAAGCATGTTTGCTGGGCTTGCCTGGATTTCTTCGGTACTAGTGATGATTGTTATAACCATTTGAGAACTATACACATGGCTATCATTTAA 5220 0.4366 MKKAYRPISHMGFPRNPQFHRNFHPPSNFRPYSKPEFRPNQRLNHPPENFSHIRRPNFVILLRSSRRDFTRAEIEALIAKCKPKAETFSVFPGDHVAARLNFFQWCDALEGFVFFWEFCLNEEVHGFVPELISHVLVPSDMDELRDRLRVIFAGHVKGLLEGKEVKRWRGESERVTKELAHLAYLLKKPKSFGVVEGLRDKRKGLESEKELIERRIREFQSAMGCMLRYLEDGKVDDEVGFSVFGKLKFDETSEWRRIHRMIMRECRRLEEGLPIYAYRSDILQTIHSQQIMVLVGETGSGKSTQLVQFLADSGIGANESIICTQPRKIAARSLALRVQEESSGCYGDNSVKFYPTFSSANEFNSGIIFMTDNCLLQQYMSDDNLSGISCLVIDEAHERSLNTDLLLALIKSLLCRRFEMRLVIMSATADAKQLSDYFYGCGIFHVVGRNFPVDVRYVPSAYAGQSGPTTVAPYVSDVVRMATEVHRTEKEGTILAFLTSQMEVEWACDKFEALSAVALPLHGKLSPEEQLCVFQNIPGKRKVIFATNLAETSLTIPGVKYVIDPGFMKDSRYEPGSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSEFDYNSMAPNQEPEIRRVHLGVAVLRILALGVKNVQDFDYVDAPSPSSIDMAITNLIQLKAIRLNKNNYELTEDGRYLVKMGVEPRLGKLILCCCQYGLVKEGLTLAAVMANARSIFCRVGNEGDKRRSDCRKVQFCHCDGDLFTLLSVYKEWESLPRERKNKWCWENSINAKSMRRCQDTIKDLESCLEYELDVVAPSYWRWDPHNSSDCDKCLKMAILSSLSENVAMYSGCHQIGYIVALTGKLVQLHPSCSLLVFSEKPSWVVFGEILSASGQYLVCVSSFDFDALCTLDPPPLFDVSEMEEKKLQMKVWTGLGCILLKRFCGKGNCNMLGLVSRIRTACKDERIFIEVNVDQNEIQLYSSSHDMELAIAMINEALEYERKWLHTECLEKCLYHGSAVSSPLALFGSGAEIKHLEVENQCLSVDVCHPNVGAFNDKDLLMFLEKNSVGSICAVHKFTNVAPDAEDREKWGRISFLSPDAAKRATELDGKEFHGSSLKIVQSQATSGGDKTYPFPAVKAKLCWPRRLSKGFGILKCEIRDVHLILKDFYNLAIGGRYVRCEAGRRGLDSIVIGGLHKELSEAEILDVLSTATSRRIVDFFLVRGDAVGNPPCNVCEEALLKEISPFMPKRHPHSSSCRVQVYPPEPKDAFMRALITFDGRLHLEAAKALEQIEGKALPGCLAWQKIKCQHLFHSSLIFPLHVYRVIKGPLDKLLASFSCIKGLEWNLEMTANGSYRIKITANATKTVAEVRRPLEELTRGKTIVHASLSPPVLQLLLSRDGINLKISVQQETETFILFDRHNLTLRVFGSPDKVELAQQKLIQSLLTLHETKQLNVHLRGKDLPPDLMKQVVKNFGPDLHGLKEKIPEADFTLNTRRQVIYVRGKMEVKPKVEELIHEIARSSSHLAERPGAGLDCPICLCEVEDGYQLENCGHLFCRVCLVEQCESAIRNRGDFPICCAHSGCVDPILLVDLKALLSSEKLEELFRASLGAFVASSEGKYRFCPSPDCPSIYRVAGPEAAGEPFVCGACYAETCTRCHLEYHPYISCERYKEFKEDPDSSLKEWCKGKEHVKTCPVCGYTIEKVDGCNHIECKCGKHVCWACLDFFGTSDDCYNHLRTIHMAII 1739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0776 1739 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 256 449 - -
Mibi09g0776 1739 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 450 622 - -
Mibi09g0776 1739 ProSitePatterns Zinc finger RING-type signature. 1546 1555 IPR017907 -
Mibi09g0776 1739 CDD DEXHc_RHA-like 290 446 - -
Mibi09g0776 1739 SMART ibrneu5 1663 1727 IPR002867 -
Mibi09g0776 1739 SMART ibrneu5 1597 1662 IPR002867 -
Mibi09g0776 1739 Pfam IBR domain, a half RING-finger domain 1606 1662 IPR002867 -
Mibi09g0776 1739 SUPERFAMILY RING/U-box 1612 1668 - -
Mibi09g0776 1739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 780 IPR027417 -
Mibi09g0776 1739 Gene3D - 1658 1737 - -
Mibi09g0776 1739 Gene3D - 248 449 IPR027417 -
Mibi09g0776 1739 CDD SF2_C_RHA 451 611 - -
Mibi09g0776 1739 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 389 398 IPR002464 -
Mibi09g0776 1739 SUPERFAMILY RING/U-box 1683 1732 - -
Mibi09g0776 1739 SMART ultradead3 271 456 IPR014001 -
Mibi09g0776 1739 FunFam RBR-type E3 ubiquitin transferase 646 752 - -
Mibi09g0776 1739 SUPERFAMILY RING/U-box 1528 1605 - -
Mibi09g0776 1739 Gene3D - 647 799 - -
Mibi09g0776 1739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1526 1606 IPR013083 -
Mibi09g0776 1739 SMART helicmild6 505 603 IPR001650 -
Mibi09g0776 1739 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 283 447 IPR014001 -
Mibi09g0776 1739 Pfam Helicase conserved C-terminal domain 486 602 IPR001650 -
Mibi09g0776 1739 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 477 643 IPR001650 -
Mibi09g0776 1739 PANTHER ATP-DEPENDENT RNA HELICASE 261 901 - -
Mibi09g0776 1739 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1658 1736 - -
Mibi09g0776 1739 ProSiteProfiles Zinc finger RING-type profile. 1530 1572 IPR001841 -
Mibi09g0776 1739 Coils Coil 195 222 - -
Mibi09g0776 1739 ProSitePatterns Zinc finger C2H2 type domain signature. 1714 1735 IPR013087 -
Mibi09g0776 1739 ProSiteProfiles TRIAD supradomain profile. 1526 1734 IPR044066 -
Mibi09g0776 1739 Pfam Helicase associated domain (HA2) 664 758 IPR007502 GO:0004386
Mibi09g0776 1739 Gene3D - 450 623 IPR027417 -
Mibi09g0776 1739 SMART ha2_5 663 759 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0776 Mibi-ChrMibi09 10415895 10422388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0776 1545 1721 C3H Transcription Factor Family AT2G31770 28.022 6.00e-14 75.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0776 09 10415895 10422388 Mibi09g0776 09 10415895 10422388 ECH