Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0754 ATGCAAAATCCAAACTCTCTTTCTCCCCCTCCGCCCTCCGCCGTCGATCCTCCTCCGGATCCAACGGTCGCCCTTCATAACCTATCCAAGGTTCGAATGAGAATGGATTCTCTGCAACGCTTTCTATACGAATCCACTACAACCAAATCTTCAGTCACCAAACACCAGATATCTATGGTCTCCAACGAAATCGCCTCCGCCGTACACCAGATTGTAGTCAACGGCGCCGCCCTCGTCTCCTCCTCTCAGAATTTCTCCAGGTTAGGGTTTGATTGTTCTGCAAGTGAGAAACGTGATTTGAAAATTGAGGTTATGGAGGATGATAATGAAGTGAAGGATGATGATGGTGATGGTGATGATGATGAGGGAAATTGTGAGATCGTGGAGCTTGATTCGGTGGAATTGCTAGCGGAACATGTTCATTTCTGTGAAATATGTGGGAAAGGGTTTAGGCGAGATGCGAATTTGAGGATGCATATGCGTGCACATGGGAATCAGTTCAAAACACCTGAAGCTTTGGCGAAGAAACCGTTGGATAAATCTGAGATTGATCGGAGGAAGATGTTGAGGTTCTCTTGTCCGTTTGAAGGTTGTAATAGGAACAAGATGCATAGGAAATTCAGGCCGTTGAAATCGGTTATTTGTGTGAAGAATCACTTTAAGAGGAGCCATTGTCCTAAAATGTATTACTGTAATAGGTGTCATAAGAAGAGTTTCTCTGTGCTTTCTGATTTGAAGAGCCATTTGAAGCATTGTGGGGAATCCTCAAAGTGGAAGTGTTCTTGTGGGACCACGTTTTCGAGGAAGGATAAATTGTTTGGTCATATTGCTCTGTTTGATGGGCACATGCCAGCTCTTGCTGGGGATGAAGAAGATAAAGGGAAGCAAATTGTAAAGGATCATGATGATGAGGATATGGATGTGATGTTCAAGGAAGAAGAATCAAGGGTCAATTATTTGGATGAGGATTTACCAGATGGATTCTTTGACGATTTAGATGAATTTGGAAACTACTCTTTGGATGAAGCTCTTGGCTTCTCTAATAGTACTGCAACTTATGGGTCACTTCCCTGA 1074 0.4339 MQNPNSLSPPPPSAVDPPPDPTVALHNLSKVRMRMDSLQRFLYESTTTKSSVTKHQISMVSNEIASAVHQIVVNGAALVSSSQNFSRLGFDCSASEKRDLKIEVMEDDNEVKDDDGDGDDDEGNCEIVELDSVELLAEHVHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKKPLDKSEIDRRKMLRFSCPFEGCNRNKMHRKFRPLKSVICVKNHFKRSHCPKMYYCNRCHKKSFSVLSDLKSHLKHCGESSKWKCSCGTTFSRKDKLFGHIALFDGHMPALAGDEEDKGKQIVKDHDDEDMDVMFKEEESRVNYLDEDLPDGFFDDLDEFGNYSLDEALGFSNSTATYGSLP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0754 357 Pfam Zinc finger, C2H2 type 142 163 IPR013087 -
Mibi09g0754 357 MobiDBLite consensus disorder prediction 1 19 - -
Mibi09g0754 357 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 106 315 IPR044300 GO:0010044|GO:0010447
Mibi09g0754 357 FunFam Zinc finger 45-like 138 164 - -
Mibi09g0754 357 SMART c2h2final6 191 224 IPR013087 -
Mibi09g0754 357 SMART c2h2final6 141 163 IPR013087 -
Mibi09g0754 357 SMART c2h2final6 229 251 IPR013087 -
Mibi09g0754 357 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Mibi09g0754 357 Gene3D Classic Zinc Finger 227 278 - -
Mibi09g0754 357 Gene3D Classic Zinc Finger 141 190 - -
Mibi09g0754 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Mibi09g0754 357 MobiDBLite consensus disorder prediction 1 20 - -
Mibi09g0754 357 SUPERFAMILY beta-beta-alpha zinc fingers 138 164 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0754 Mibi-ChrMibi09 10021791 10022864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0754 105 290 C2H2 Transcription Factor Family AT1G34370 59.043 2.14e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi09g0754 zf-C2H2 0.00025 CL0361