Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0659 ATGGATTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAAGGAGATCAGGATTTGACGAAGAGCAAGGAGAAAAGCGATAAGAGCGAGAGGGCTTATCGGAAACGTGACGTCGACGACGATGTTGTTGACGGCGAAGAGAAGAAGAGTAGTAAGAGGTCAAGAGGCGACGACGAGAATGGGTCGAGGAAAGATCGTGAGGAACGCGAGAGAGAACGGTCAAGTCGAGATAAGGAACGCCATAGGAGTAGCAGAGATAGAGACAGAGAGAGGGATGGTGATAGGGAGAGGGAGAGAGAGAGGAGGAGTAGCAAGGAGAGAGATAGGGAGAAGGAGAGGGAGAGGAGGGATAAGGATAAGGAGAGGGAGAAGGAGAAGGAGAAGGAGAAGGAGAGGAGGGAGAGAGATAAGGAGAGGGAGAAGGAACGGGAGAGAAGGGAGAGGGAGAGGGAGAGGGAGAAGGAGGAGAGAGAGAGGTCTAGGAGAAGCAGAAGTCGTTCTGAACGAGATAGAGAAAGAGAAAGAGAACGAGAATTGGAGTCTAGAGATAGCCGGAGGTTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCTCTAAAAGCAACAGAGAGAGATGTTTATGAATTCTTCTCGAAAGCTGGCAAGGTGAGGGATGTCCGTTTGATCATGGATAGGAATTCAAGGCGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGTGATGTCTGTGCCAATGGCAATTGCCCTTTCAGGCCAACTGCTTCTGGGACAACCTGTGATGGTCAAACCTTCAGAGGCTGAAAAAAACCTTGTTCAGTCTAATACTACCAGTGGAGCTGCTGGAGTAACAGGACAATATGGACCAGTGGAGAGGAAACTTTATGTGGGGAACCTTCACTTTAACATGACTGAGGCTCAGCTGAGAGAGATTTTTGAGCCATTTGGTCCTGTGGAGCTTGTTCAGCTACCCCTTGACTTGGAGACAGGACATTGCAAGGGTTTTGGCTTTGTACAATTTGCTAATCTTGAACACGCCAAGGCAGCTCAGAGTTTGAATGGAAAATTAGAGATTGCTGGTAGGACTATCAAGGTGTCATCGGTAACAGATCATGTTGGAGGCCAAGATACAACTGCAAAATCTGCAGATTTGGATGATGATGAAGGTGGATTGTCATTGAATGCTCAATCAAGAGCAATGCTTATGGCAAAGTTGGATCGCTCTGGTATTGCTACAAGCCTTGGAGGGCCTATGGGTGGTGTGCCTGTTGTGAATGGCTCAGCCCCTGCCCCGCAGGCTATTAGTTTGCCTGTTGGGGCTCCTGGTATAGTACCTGCATCAACTCTCCCAACAGCCATTATGCCTACCCCAGGAGCAGAGCCGGTTGGAACCCCCAGCGAGTGTTTGCTGTTAAAGAATATGTTTGATCCAACTACTGAGACGGAACCAGATTTTGATGAGGATATTAAGGAGGATGTAGCAGAGGAATGTTCTAAATTTGGTCGGGTGAAGCATATTTATGTTGACAAAAATAGCGCAGGTTTTGTGTATCTACAGTTTGAATCTGTGCAAGCTGCGAGTGCTGCTCAACAGGCAATGCACATGAGATGGTTTGCCCGAAGGTTGATTTCAGCAGTGTACATGCAACCTCAGGTATACGAAGCGAAGTTTAGAGAAGCTTGA 1734 0.4752 MDFDEYDYLEKTVEEQGDQDLTKSKEKSDKSERAYRKRDVDDDVVDGEEKKSSKRSRGDDENGSRKDREERERERSSRDKERHRSSRDRDRERDGDRERERERRSSKERDREKERERRDKDKEREKEKEKEKERRERDKEREKERERREREREREKEERERSRRSRSRSERDRERERERELESRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVTGQYGPVERKLYVGNLHFNMTEAQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFANLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGGQDTTAKSADLDDDEGGLSLNAQSRAMLMAKLDRSGIATSLGGPMGGVPVVNGSAPAPQAISLPVGAPGIVPASTLPTAIMPTPGAEPVGTPSECLLLKNMFDPTTETEPDFDEDIKEDVAEECSKFGRVKHIYVDKNSAGFVYLQFESVQAASAAQQAMHMRWFARRLISAVYMQPQVYEAKFREA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0659 577 MobiDBLite consensus disorder prediction 1 205 - -
Mibi09g0659 577 Gene3D - 479 577 IPR012677 -
Mibi09g0659 577 Gene3D - 200 293 IPR012677 -
Mibi09g0659 577 CDD RRM3_RBM39_like 483 565 - -
Mibi09g0659 577 FunFam Splicing factor, CC1-like protein 479 577 - -
Mibi09g0659 577 Coils Coil 66 86 - -
Mibi09g0659 577 MobiDBLite consensus disorder prediction 10 205 - -
Mibi09g0659 577 SMART rrm1_1 485 562 IPR000504 GO:0003723
Mibi09g0659 577 SMART rrm1_1 310 383 IPR000504 GO:0003723
Mibi09g0659 577 SMART rrm1_1 208 280 IPR000504 GO:0003723
Mibi09g0659 577 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 402 502 IPR029123 -
Mibi09g0659 577 Gene3D - 301 400 IPR012677 -
Mibi09g0659 577 CDD RRM2_RBM23_RBM39 311 383 - -
Mibi09g0659 577 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 575 - -
Mibi09g0659 577 SUPERFAMILY RNA-binding domain, RBD 308 567 IPR035979 GO:0003676
Mibi09g0659 577 TIGRFAM SF-CC1: splicing factor, CC1-like family 87 574 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mibi09g0659 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 276 IPR000504 GO:0003723
Mibi09g0659 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 508 560 IPR000504 GO:0003723
Mibi09g0659 577 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 381 IPR000504 GO:0003723
Mibi09g0659 577 FunFam Splicing factor CC1-like 293 398 - -
Mibi09g0659 577 CDD RRM1_RBM39_like 208 280 - -
Mibi09g0659 577 Coils Coil 97 172 - -
Mibi09g0659 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 484 567 IPR000504 GO:0003723
Mibi09g0659 577 FunFam Splicing factor CC1-like 131 292 - -
Mibi09g0659 577 SUPERFAMILY RNA-binding domain, RBD 200 289 IPR035979 GO:0003676
Mibi09g0659 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 387 IPR000504 GO:0003723
Mibi09g0659 577 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0659 Mibi-ChrMibi09 8518388 8525531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0659 281 382 Eukaryotic Initiation Factors Gene Family AT4G34110 36.893 3.90e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0659 09 8518388 8525531 Mibi09g0659 09 8518388 8525531 ECH