Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0627 ATGGTGAGAGACGATCTGTACATAACGATTCCGAGCTTTTTCCGGTGCCCTATTTCTCTCGATATCATGAAATCTCCGGTGAGTCTCTGCACCGGCGTCACCTACGACCGTTCCAGCATCCAACGCTGGCTAGACAACGGCAACAACACTTGTCCAGCCACCATGCAGGTTTTACAAACCAAAGATTTCGTTCCCAACCGTACTCTACACAGACTCATCCAGATCTGGTCTGACTCCGTCAAAAACAACCGACTCCACTCGCCCGATTCTCCGGCCACTACCACCACAACAACAGTCCCCTCGCCGGACCAGGTCGTCGACTCTGTGAAGCACTTGGACGGAGACGGTGAGAATTGTCTCGATTCGTTGACGAGGATTGTGTGTTTCGCTGAGGAATCTGAGGATAATCGGGAATTCCTAGCGAAGTTGGATGGATTTGTGCCTTTGCTTGTTGATTTACTCGACAATGTCAATGGCGTTGTGGAAATGCTTGAGAGAGTGGTTATTGCGTTGGATTCGGTCATGAAAAAAATCGAAGATCGAGAGAAGTTGAAGAAATTGGTGGTGAAGAATCACGGTAATTGCATAGCTTCTCTTCTCCTTGTTCTTCAACAAGGAAACGACAGATCGAGAATCGGATCGGCGAGGATTCTGAAATTCATCGCCATGGACACCGACGCCAAATACATGATCGCAGAAAAGGAAGGTTTAATGTCCGAATTGATCAAATCAATCGCTCCAGAAAACGACCAAGAGTTAATCGAAAATTGCCTATCGTGTTTGATCGCAATATCGACGCAGAAACGGAACAAATTGAGATTAGTCAATCTCGGAGCTGTAAAATCGCTTTCGAAGTTACTTTCCGGCGCGAATTCGAGCACATCGGTGACGGAGAAGGTGTTGAAGCTTCTCGAAACGGTGTCGTCGACGAAGGAAGGTAGGTCGGAGATTTGTGAAGATCCGGCGTGTTTACCGGCGATATTGCAGAAAGTGATGAAGGTATCGGTGATTGCGACGGAGCATGCGGTGATGATACTGTGGACTGTGTGTTATCTTTTTCGTGATCAGAAGGTGCAAGAAGTTGTTGCAATGGCGAACGGATTCACCAAATTTCTGCTTCTGATGCAGAGTAATTGTTCGCCTGCGGTTCGTCAAATGTCGTCTGATTTGCTGAAGATTTTCCGGGTCAACTCGAAATCATGCCTTTCTTGTTATGATACTAAGACCACTCATATCATGCCTTTCTGA 1248 0.4688 MVRDDLYITIPSFFRCPISLDIMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKDFVPNRTLHRLIQIWSDSVKNNRLHSPDSPATTTTTTVPSPDQVVDSVKHLDGDGENCLDSLTRIVCFAEESEDNREFLAKLDGFVPLLVDLLDNVNGVVEMLERVVIALDSVMKKIEDREKLKKLVVKNHGNCIASLLLVLQQGNDRSRIGSARILKFIAMDTDAKYMIAEKEGLMSELIKSIAPENDQELIENCLSCLIAISTQKRNKLRLVNLGAVKSLSKLLSGANSSTSVTEKVLKLLETVSSTKEGRSEICEDPACLPAILQKVMKVSVIATEHAVMILWTVCYLFRDQKVQEVVAMANGFTKFLLLMQSNCSPAVRQMSSDLLKIFRVNSKSCLSCYDTKTTHIMPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0627 415 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Mibi09g0627 415 SUPERFAMILY ARM repeat 113 397 IPR016024 -
Mibi09g0627 415 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 278 322 IPR000225 GO:0005515
Mibi09g0627 415 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Mibi09g0627 415 Pfam Neurochondrin 240 352 IPR008709 -
Mibi09g0627 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 89 IPR013083 -
Mibi09g0627 415 PANTHER WDSAM1 PROTEIN 9 403 IPR045185 GO:0061630
Mibi09g0627 415 SUPERFAMILY RING/U-box 5 82 - -
Mibi09g0627 415 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Mibi09g0627 415 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Mibi09g0627 415 CDD RING-Ubox_PUB 14 56 IPR045210 -
Mibi09g0627 415 Gene3D - 144 397 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0627 Mibi-ChrMibi09 8201551 8202798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0627 1 415 U-box Gene Family AT5G64660 52.347 1.09e-147 424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0627 09 8201551 8202798 Mibi09g0627 09 8201551 8202798 ECH