Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0623 ATGAAATTCCGTGCGCCAGCATTGCGCACGTTAGCAACATCCAATGAAAATCATCCACCTCAGCGCACCTTAGTAGCCCTGAGACCCTCTTTCGTCAATGCCACTCTCCTTCCTTCTCCATTCTCTTCTTCCTCTACCCACACACACACACACACCCCTCTCTCTCTCCCTCTGATAAACCAAGCCTCATTTGATTCCGATTTTGCCCTCCACTTCTCCCTAAAATTACCGTCCTGTCCCTCACGTATGGCTCCGGCCAGCTCCTCTGCGGCGGCGGCTCAGAGGGTGATCGGGTTCAGCCGGCGTACACAGGCTCCGAGGGTGCCGTCGGCGGCGGTGAAGAAGTATAAGTCATTGGCTGAGATATTGGGGAAGGCGAGATATGCTGTGGTGGAGAGGGATGATTATAGCGATGTGTTGTGTGATCAATGTGGGTCTGGTGAACGGCCTGAGGAGCTGCTTCTTTGTGATAAATGCGATAAAGGCTTCCATATGAAATGCGTGAGGCCTATTGTTGTTAGAGTTCCCATTGGATCATGGCTTTGCCCTAACTGTTCTGGGGACAAGAGAGTAAGAAGTTTTTCTCAGAGGAAGATTATTGATTTTTTCCGGATTCAGAAATGTGCTGATGATCTTAAAAACAATTGCTCTTCTCCACAAGATGCTAAGAAGCGTAAAAGGCGTACCTCGCTGATATTGCACAAGAAACGAAGAAGACTATTGCCATTTATTCCTACAGAAAATCCTTCTCAGAGACTGAAACAGATGGGTTCTCTTGCCTCTGCTTTAACTGCATTGCATATGGAATTCAGTGATGATCTCACTTACTCACTTGAAATGGCTCCTAGGTCTGCTAATCATGCCGATTTTGAAAATGGTGGCATGCAGGTTCTTTCCAGGGAAGATATTGAGACCTTGGAACACTGCAGAGCAATGTGTAGAAGAGGCGAATGCCCTCCCCTTATGGTTGTTTATGATTCATGTGAAGGATATACAGTAGAGGCCGATGGCCCAATCAAGGATATGACATTCATTGCTGAATATACAGGCGATGTGGATTACATTAAAAACCGAGAACATGATGATTGTGACAGTCTGATGACCCTTCTGCTAGCAACTGATCCTGCTAAAAGTCTTGTAATCTGCCCTGATAAACGTGGAAACATTGCTCGCTTTATAAATGGCATCAACAATCATACACAGGAAGGTAGAAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTCCTAAAGGGGAGAGGCTTTATTATGATTATAACGGTTATGAGCAAGAATATCCTACTCATCATTTTGTCTGA 1362 0.4515 MKFRAPALRTLATSNENHPPQRTLVALRPSFVNATLLPSPFSSSSTHTHTHTPLSLPLINQASFDSDFALHFSLKLPSCPSRMAPASSSAAAAQRVIGFSRRTQAPRVPSAAVKKYKSLAEILGKARYAVVERDDYSDVLCDQCGSGERPEELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPNCSGDKRVRSFSQRKIIDFFRIQKCADDLKNNCSSPQDAKKRKRRTSLILHKKRRRLLPFIPTENPSQRLKQMGSLASALTALHMEFSDDLTYSLEMAPRSANHADFENGGMQVLSREDIETLEHCRAMCRRGECPPLMVVYDSCEGYTVEADGPIKDMTFIAEYTGDVDYIKNREHDDCDSLMTLLLATDPAKSLVICPDKRGNIARFINGINNHTQEGRKKQNCKCVRYNVNGECRVFLVATRDIPKGERLYYDYNGYEQEYPTHHFV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0623 453 ProSitePatterns Zinc finger PHD-type signature. 141 185 IPR019786 -
Mibi09g0623 453 Pfam SET domain 269 441 IPR001214 GO:0005515
Mibi09g0623 453 Gene3D SET domain 225 453 IPR046341 -
Mibi09g0623 453 MobiDBLite consensus disorder prediction 1 20 - -
Mibi09g0623 453 SMART PHD_3 140 186 IPR001965 -
Mibi09g0623 453 ProSiteProfiles SET domain profile. 319 441 IPR001214 GO:0005515
Mibi09g0623 453 SUPERFAMILY FYVE/PHD zinc finger 114 186 IPR011011 -
Mibi09g0623 453 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 218 451 - -
Mibi09g0623 453 Pfam PHD-finger 141 186 IPR019787 -
Mibi09g0623 453 SUPERFAMILY SET domain 303 441 IPR046341 -
Mibi09g0623 453 CDD SET_ATXR5_6-like 316 453 - -
Mibi09g0623 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Mibi09g0623 453 FunFam Histone-lysine N-methyltransferase ATXR5 225 453 - -
Mibi09g0623 453 ProSiteProfiles Zinc finger PHD-type profile. 138 188 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0623 Mibi-ChrMibi09 8118796 8122990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0623 138 194 C2H2 Transcription Factor Family AT3G01460 37.931 1.23e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi09g0623 SET 4.5e-08 No_clan