Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0580 ATGGATTTGTGGGTTTCCAGAGTTACTCCAGAAATCACAAGCCCTTCTGATCCAGTAAAGAAGGGCACAAATTTGTTCAACAATGGCAAACAGGTTACAAGTGAGAACCTAGAAAGTTCTGTGTACCTGTCATCCATGAGCACTATTAAAAAATCCAATGGGAAGCCAAAATCTTCAGCCACTCCTCCAAAGGTTAAGACAGGCAGAGTACAAAAGAAGGTTTCAAGTAAGAGCCCAGAAAGAGCTTTGAGGCTAAAGAAATCAACCATTGATTTTGAGTCTCATGCTCTTAAGCGAGCAAAAGAGGTTCAAGCAAATCTATCTCATCAATTTCCAAGCCTTATCAAGTACATGCTCCGATCTCATGTTTCAAGTCCATTTTGGCTGGGTCTTCCTACAGATTTCTGTGTAATGCATTTGCCCCAGGATGATGCTATGTTTGTTTTGGAAGATGAGAATGGAAGAGAATACAAAACAAAATATCTTCCCCGGAAGGTGGGACTAAGTGGTGGATGGAGATGGTTTTCCATAGCTCACAATTTAGTTGAGAAGGATGTTTTAGTTTTCCATCTAATCCAGCCTCGAAAGTTTAAGGTGTACATAATTAGGTTTCATGGGTCAAATGAAGTGGATGTTGCTCTTGACCTTTTGCATTTAGACGATCACATGACACAACAAGATTCTAATGTTGCTCGAGAAAATGATCCAAGCAATACCACAATGATGTGTGATGCTAACATACCGCCATTAGATCAACATGAAAATACTAGTGATCTAGATGACAATCTTGGCTCTGAAGGATTGAATGGGATTAGACTATCAGAATCTACAATTACCTTCCAACAAGTCACAGATATTGAGAATTTCAGTATTGTGGTTAATGGTCTAGTACTTGACTCCGAACTATCCAAACACCTCAAGACTAAGTACTACGAACTTTGTTGTAGTCAAAGAATGTTTCTTCATGAGAATCTTCTTGAAGGTCAGAACTGTAAACTTGTTGTTGGATTGATCTGTGAGACCATTAATATTACCGATGCCATTAGAGCCAGTAAGATCACAACCTCTTTAGAAAGTTTTGCAGTGTGGTATAAATCTTTAAAAGGCCTTGAAATCTTAGGCATGAATGTTAGCTTCTTGCTTGCTAGGCTTGAACAACTCATGAGTTTAGCTTCAAAATTCAAGAGGCACATGGAGACAAGGGTTAAACAAGACCAAGCTGAAGAGGAAAAGAGAGTTCTTGAACTAGAGCTTGAGGAAGTGAGAAAGACTATAAGTATACTTGATGATGAGCTTGACTTACAAAATCGTAACCTTAAGAGTTTGAAGGCTGAGTTTCAAGTTATGGCTTGTAATCTTTGGTGA 1365 0.3875 MDLWVSRVTPEITSPSDPVKKGTNLFNNGKQVTSENLESSVYLSSMSTIKKSNGKPKSSATPPKVKTGRVQKKVSSKSPERALRLKKSTIDFESHALKRAKEVQANLSHQFPSLIKYMLRSHVSSPFWLGLPTDFCVMHLPQDDAMFVLEDENGREYKTKYLPRKVGLSGGWRWFSIAHNLVEKDVLVFHLIQPRKFKVYIIRFHGSNEVDVALDLLHLDDHMTQQDSNVARENDPSNTTMMCDANIPPLDQHENTSDLDDNLGSEGLNGIRLSESTITFQQVTDIENFSIVVNGLVLDSELSKHLKTKYYELCCSQRMFLHENLLEGQNCKLVVGLICETINITDAIRASKITTSLESFAVWYKSLKGLEILGMNVSFLLARLEQLMSLASKFKRHMETRVKQDQAEEEKRVLELELEEVRKTISILDDELDLQNRNLKSLKAEFQVMACNLW 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0580 454 CDD B3_DNA 112 203 IPR003340 GO:0003677
Mibi09g0580 454 Gene3D - 92 205 IPR015300 -
Mibi09g0580 454 SUPERFAMILY DNA-binding pseudobarrel domain 107 204 IPR015300 -
Mibi09g0580 454 SMART B3_2 114 205 IPR003340 GO:0003677
Mibi09g0580 454 MobiDBLite consensus disorder prediction 48 79 - -
Mibi09g0580 454 MobiDBLite consensus disorder prediction 1 30 - -
Mibi09g0580 454 Pfam B3 DNA binding domain 115 203 IPR003340 GO:0003677
Mibi09g0580 454 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 31 204 IPR044837 -
Mibi09g0580 454 Coils Coil 397 445 - -
Mibi09g0580 454 MobiDBLite consensus disorder prediction 9 30 - -
Mibi09g0580 454 ProSiteProfiles B3 DNA-binding domain profile. 114 205 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0580 Mibi-ChrMibi09 7489866 7493180 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0580 96 209 B3 DNA Binding Superfamily AT5G42700 51.754 2.60e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mibi09g0580 B3 3.4e-12 CL0405