Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0573 ATGGCTGGCAAAAGTAGTAAGAAACCTGTTAGCCTCAACGATAGCCATTATCGATTCCTCCAAGACCTTTCTGCTCCTCCGAAGCCCTTCGCAAATCCATCTGATGACGAGGACGAGTCGTCCGAGATAATACTCAAAGGTGGAAGGCAGCAGCATCAGGGAAAATACTTATTTAGGGATGAAGAAGATGATAGCATCCCTCGATTTTCTGCCATTACTGACTTTGATTCTCCTATTGAGCTACGCTCAGCGGAAGACAAACAGTCCGTCGAGTTAGATGGTCGAAATAGACTCTGCACATTCTCGCCAAAGGGAAAAAGTAAAGATCAAGGCGACAATATTCCCCAATCTAAAGAAGCTACCGACTTTGATACCCACAAAGGGGAAAGGAAGACTAAGGTCAAAATGGAAGGCCGGCGTCGCCTGTGTAAGATGTCTTGTTCAGATAATGATAGTGCTGATAAAACGGTGGCGCTTGATGACTTGGAGGTTTCTGACCTTGTGGATTTTGATTCACCCCCTTTGCCAGCGAAAAATGCAATTGGGATTGAGAAGAGTCAGGGTAGGAGTGAAATTAGGGACATATTAGATGAGTTGAGCTCGAAGTTTGATGTTCTGTCAATTGAGAAGAAGCGGGTAGCAAAACCAGCTCATCCATTTGAAAGCTGTTCGGCATTGGTGATAGAAGATGAAACTGTGGAAGATAAGAATGCTGATTATGCCAGTGCAGATTCTTCATTTTCAGCTCAACAGGACCCATGTGAGAGCTCATCTGATGCATCTAAGAGTGCTTCTGGAGGCATTGAACATGTAGAAGACGATTTAGAGGATTCTGTTGAAGTGCTGGATCATTTTGACTCTGAGAATGTTGATTCTATAACATTGAGTGGCCCACATTTCACATATAAGTTGCCGGGCAAGATTGCGAAAATGTTGTATCCACATCAGCGTGATGGTTTGAAGTGGCTCTGGTGTCTGCATTGTCAGGGAAAGGGTGGAATCCTGGGGGATGACATGGGTCTGGGGAAAACTATGCAGATTTGTAGTTTTCTAGCTGGTTTATTCAATTCAAGGCTGATTAAAAGGGCATTGGTGGTGGCACCAAAAACCCTACTTCCACATTGGATCAAAGAACTATCTGTTGTTGGTCTTTCTGAGAAGACTAGGGAATACTTTGGAACTTGTACTAAACATCGAGAGTATGAACTTCAATACATACTCCAGGATAAAGGTGTTCTTCTTACAACATATGATATTGTTCGCAATAATTCTAAATCATTACGGGGGAATTATCTATCTGATGATGAGGAAAGTGAAGACTGCCCCATATGGGATTATATGATGCTTGATGAGGGCCATCTTATAAAGAATCCAAGCACACAAAGAGCTAAAAGTTTGCTAGAGATACCAAGTGCCCATCGGATAATCATCAGTGGCACACCTTTGCAAAATAATCTTAAGGAGTTGTGGGCCTTGTTCAATTTCTGCTGCCCTGAGTTGCTGGGTGATAAGAAATGGTTTAAAGAAAATTTTGAGTCAGCTATACTTCGTGGAAATGACAAAAAAGCTTCTGAGAGAGAGAAGCGTGTTGGTTCTTCTGTTGCGAAGATGCTTAGAGATCGTATTCAGCCTTACTTTTTAAGACGCCTAAAGAGTGAGGTTTTTAATCAAGATGACAAGAATACAGCAGCAAAACTCTCTCAGAAACAGGAGATTATTGTGTGGCTAAGATTGACTAGTATTCAGAGATATCTTTATGAAGCATTTCTAAAGAGTGAGATTGTTCTTTCAGCATTTGATGGCTCACCACTTGCTGCACTTACGATTTTGAAGAAAATTTGTGATCACCCACTTTTGTTGACTAAGCGGGCAGCTGAAGATGTGTTGGAAGGGATGGACTCAATGTTAAAGCCAGAAGAAGTTAGTGTTGCTGAGAAATTGGCAATGCACATAGCTGATGTTGCTGAAGCAGACAAGTTCAAGGCAGAGCATGATGTCTCATGCAAAATGACTTTCATAATGTCATTGTTGGACAATTTGATTCCACAAGGACATCATGTGCTTATTTTTTCTCAAACTCGCAAGATGCTTAATCTTATTCAGGAATCTATAACGTCCAAAGGTTATGAATTTGTACGAATTGATGGGACAACAAAAGCTAGTGATAGAATAAGGATTGTTAATGATTTCCAAGAAGGTTCTGCAGCTCCTATATTTCTTTTGACATCTCAAGTTGGTGGCTTGGGGCTGACACTTACTAAGGCTGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTTGACCGTGCATATCGTATCGGCCAAAAGAAAGATGTTCTTGTATATAGACTAATGACAAGTGGAACTGTTGAAGAAAAGATATACAGGAAGCAGGTGTACAAGGGGGGTTTGTTTAAAACAGCAACAGAGCATAAAGAGCAAATTCGGTATTTCAGCCAGCAGGATCTTAGAGAGCTTTTCAGCATCCCTAAGGAGGGTTTTGATGTGTCGGTTACTCAGAAACAATTAGAGGAGGAGCATGCTTGTGAAGATACAGTGGATGACTCTTTCAAAGAACACATGGAGTTCTTGAAAAGTCAAGGTATAGCTGGAGTTAGTCACCATAGTTTACTCTTCTCCAAAACAGCACCAGCTCAAGATGCACCTGAGGATGATCAAGTGTTAAGGAATCATGGAACCAGATATGTTGGCACTTCAGCATCTACTTCTCTTGAACGTCCTTTTGCTTTCAATCCAAAGGAAGTCAAATTGAACAAAAAAGGTTCTTCCCCAAGTAGTTCTGGTAAATTGACTGAGTCTGAAATCAGGGAAAAAATCAAACGGATTTCTCGAACATTAGCAGATAAGGCTATGATATCTAGATTACCTGATGGGGGAAGAAAACTACAACAGCAGCTTGCTGAACTAAATTCGGAGCTCAGCAAATTGAAGATGGAAGAAAGAGATGTGATTGATTTGGATGATATAAGTGGAAAATTTCAAAGGGTATTAAATGTGTAG 3042 0.4106 MAGKSSKKPVSLNDSHYRFLQDLSAPPKPFANPSDDEDESSEIILKGGRQQHQGKYLFRDEEDDSIPRFSAITDFDSPIELRSAEDKQSVELDGRNRLCTFSPKGKSKDQGDNIPQSKEATDFDTHKGERKTKVKMEGRRRLCKMSCSDNDSADKTVALDDLEVSDLVDFDSPPLPAKNAIGIEKSQGRSEIRDILDELSSKFDVLSIEKKRVAKPAHPFESCSALVIEDETVEDKNADYASADSSFSAQQDPCESSSDASKSASGGIEHVEDDLEDSVEVLDHFDSENVDSITLSGPHFTYKLPGKIAKMLYPHQRDGLKWLWCLHCQGKGGILGDDMGLGKTMQICSFLAGLFNSRLIKRALVVAPKTLLPHWIKELSVVGLSEKTREYFGTCTKHREYELQYILQDKGVLLTTYDIVRNNSKSLRGNYLSDDEESEDCPIWDYMMLDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKENFESAILRGNDKKASEREKRVGSSVAKMLRDRIQPYFLRRLKSEVFNQDDKNTAAKLSQKQEIIVWLRLTSIQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVSVAEKLAMHIADVAEADKFKAEHDVSCKMTFIMSLLDNLIPQGHHVLIFSQTRKMLNLIQESITSKGYEFVRIDGTTKASDRIRIVNDFQEGSAAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTSGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSIPKEGFDVSVTQKQLEEEHACEDTVDDSFKEHMEFLKSQGIAGVSHHSLLFSKTAPAQDAPEDDQVLRNHGTRYVGTSASTSLERPFAFNPKEVKLNKKGSSPSSSGKLTESEIREKIKRISRTLADKAMISRLPDGGRKLQQQLAELNSELSKLKMEERDVIDLDDISGKFQRVLNV 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0573 1013 Pfam SNF2-related domain 327 619 IPR000330 GO:0005524|GO:0140658
Mibi09g0573 1013 Gene3D - 571 870 IPR027417 -
Mibi09g0573 1013 MobiDBLite consensus disorder prediction 929 948 - -
Mibi09g0573 1013 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 672 831 IPR001650 -
Mibi09g0573 1013 Gene3D - 291 570 IPR038718 -
Mibi09g0573 1013 Coils Coil 973 1000 - -
Mibi09g0573 1013 MobiDBLite consensus disorder prediction 111 135 - -
Mibi09g0573 1013 SMART helicmild6 698 781 IPR001650 -
Mibi09g0573 1013 MobiDBLite consensus disorder prediction 1 53 - -
Mibi09g0573 1013 FunFam Protein CHROMATIN REMODELING 24 291 569 - -
Mibi09g0573 1013 MobiDBLite consensus disorder prediction 241 269 - -
Mibi09g0573 1013 CDD SF2_C_SNF 661 792 - -
Mibi09g0573 1013 MobiDBLite consensus disorder prediction 241 264 - -
Mibi09g0573 1013 MobiDBLite consensus disorder prediction 94 135 - -
Mibi09g0573 1013 Pfam Helicase conserved C-terminal domain 671 781 IPR001650 -
Mibi09g0573 1013 PANTHER SNF2/RAD54 FAMILY MEMBER 128 989 - -
Mibi09g0573 1013 SMART ultradead3 307 507 IPR014001 -
Mibi09g0573 1013 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 499 IPR014001 -
Mibi09g0573 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 549 IPR027417 -
Mibi09g0573 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 841 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0573 Mibi-ChrMibi09 7394975 7404395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0573 312 835 RAD5 or RAD16-like Gene Family AT1G02670 24.737 5.97e-38 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi09g0573 SNF2_N 1.4e-46 CL0023