Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0466 ATGCAATTATCCAAAGTGGATCGAGATCATGGAAAAAGATCAGGTGGTTGGGAAGAAGAGAAAGAGAAAGAGGAAGAAGAAGAACACTTAATGTTTCCAATATACTCAGATCGTTCTCAGCAAGATATGTCCGCCATGGTTTCTGCTCTTGCTCAGGTCATTGGAGCTTCCCCTAACGCTTTATCTCATCATCATGATATGTCTCACTCAACTTCTCTACCTAATATCTCACAACAAGCTCTTCAATCACTTCAAGGGAGCACAAGGAAGAGACACTACAGAGGAGTGAGGCAAAGGCCATGGGGGAAATGGGCGGCTGAGATTCGTGATCCGAAGAAAGCCGCCAGAGTTTGGCTCGGAACATTCGACACGGCGGAGGCGGCCGCCGTGGCATACGATGAAGCCGCTCTCAAATTCAAAGGAAGCAAAGCTAAGCTCAACTTTCCTGAAAGAGTTCAACTTCAACCACCACCTTCTTCTTCCATATCCATGTCCATGACGACGTCGTTTCCTTCTTCTTCAGGTGAATTCTCTTTCCTCACAAATCCATCTTCCCTTAATCCACAACATCAACCTCTTGTTCTTGCTCCTCCCACAACATCATTGGCTTCACAACAACCTTATCATCATCATCATCATCATCATAGTTATTACCAATATCATCAAAATCTTATGCCAAGTGGTGGTTGGGATCACAACTTGTTTTATTCTCAACAACAACAACAACATCAGCAGCCTTATACGGCTTCGACTTCATCGTCTTCGTCATCTCACCACCACCAACATGATCAACAAGAACAACTTCTACAGTTTTCCATGCAATTTGGAGGTCCCTCCTCTTCTACTTCTTCTCATCCTCCTCCTTCCAATTGGCCATATCATGATTTTGGTGATGGTCAACGTTGA 906 0.4426 MQLSKVDRDHGKRSGGWEEEKEKEEEEEHLMFPIYSDRSQQDMSAMVSALAQVIGASPNALSHHHDMSHSTSLPNISQQALQSLQGSTRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAVAYDEAALKFKGSKAKLNFPERVQLQPPPSSSISMSMTTSFPSSSGEFSFLTNPSSLNPQHQPLVLAPPTTSLASQQPYHHHHHHHSYYQYHQNLMPSGGWDHNLFYSQQQQQHQQPYTASTSSSSSSHHHQHDQQEQLLQFSMQFGGPSSSTSSHPPPSNWPYHDFGDGQR 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0466 301 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Mibi09g0466 301 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Mibi09g0466 301 Gene3D AP2/ERF domain 91 151 IPR036955 GO:0003700|GO:0006355
Mibi09g0466 301 MobiDBLite consensus disorder prediction 238 258 - -
Mibi09g0466 301 MobiDBLite consensus disorder prediction 1 29 - -
Mibi09g0466 301 FunFam Ethylene-responsive transcription factor 2 91 150 - -
Mibi09g0466 301 PANTHER DNA-BINDING DOMAIN 56 267 IPR044808 GO:0003700|GO:0009873
Mibi09g0466 301 MobiDBLite consensus disorder prediction 266 289 - -
Mibi09g0466 301 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Mibi09g0466 301 CDD AP2 92 150 IPR001471 GO:0003700|GO:0006355
Mibi09g0466 301 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Mibi09g0466 301 MobiDBLite consensus disorder prediction 238 301 - -
Mibi09g0466 301 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Mibi09g0466 301 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0466 Mibi-ChrMibi09 6051260 6054317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0466 31 154 AP2-EREBP Transcription Factor Family AT5G61890 65.909 4.93e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi09g0466 AP2 5.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0466 09 6051260 6054317 Mibi09g0466 09 6051260 6054317 ECH
Mibi09g0466 09 6051260 6054317 Mibi02g0718 02 6910527 6912190 ECH