Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0460 ATGCCTTTTGAAATAATGGATCAGAGGGCTGTATCTGCCTCATCACACTTTTTTGATGACATTTCCTTTTGCTCTGAGAAGAATGCCGGATTGCGAGGGCCAAAATCCGTTCATGACCACTGCCATCAAGGAAAGCATGGAATGGCAGCATCCCGTGGCAGCATTTTGAATGCTTTGTCACCTCAGGATATTAGTGCAAACACTGGCTGGTCTAAGTCACCAACAGGTCTGTCTGGAGATACGATAAAAAAGCTACATGTTGGTGAAGAAGGCAATGTTGATATGTTTAAAGCCTCCAAGGAAGCATTAAATCATCATCCCAGATCTCAGTCTAATGAGCGTATGCAGCCAGCATCTAACCCGTATGGTTTAATTGGCAATAAAATCCTCACTAATGCTGCCTCACGTGAAAGTAGTCTATTCTCAAGCTCACTATCTGAGATATTTACCCGGAAGCTGAGTTGTACAGAAAATGATGTTCTTCCTCAACAGCCTGTTACTGTTGGTTCACTTCCTGACGAGGAACCATACAAATCTCTTGAAGAAATTGAGGCTGAAACTATTGGAAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTGGCTGATGACTTAGGATTCAATACTCTTGCCAAAACTGGTGATGACCTGGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGCTAGAAGGCGTTGAACATGGAACTTCAGGGAAAAGGACCTGCGGTCCAGATGGAGATCCTGGTTGCTTTGGAGGCTTCAAAGGGAAACTTCCTTTTGGTGAACACCCTTCTAGAACACTTTTTGTTAGAAACATCAACAGTAATGTCGAAGATTCTGAGTTAAAGGCTCTCTTTGAGCAATATGGTGATGTCCGTACGACTTATACTGCTTGCAAGCATCGCGGATTTGTTATGATTTCTTATTATGATATAAGAGCTGCACAAAATGCAATGAAAGCTCTTCAAAACAGGTCATTGAGGTCTAGGAAACTCGACATACATTATTCGATACCAAAGGTAAATGCTCCAGAGAAGGATATTAGCCATGGTACATTGCTTCTATCTGGTCTTGATTCTTCTATTTCAGATGATGAACTTCTACAAATTTTTGGATTTTATGGAGAAATCAGAGAAATTTATAAAGCTCCAGAAATGAATTATGAGAAGTTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCCTTGAACAAGAGCGAAATCGCTGGGAAGCAGATCAAAATTGAACCCAGCCATCCTAGGGGTTCTAATACAACAAGTTTGATGGAGCAGTCTCAGAAGGGGCAGAATGAGTCTGAACATAGTCAGAGTATGGGTGATAGCTTATCACTAGGCCAGAATGCAATAACGTCTTCTGGAGTAATTGCATCTGGCTGCTTGGACAATGGATCTGATCAAGGATTTCCAACAGCAATAAGACAAACTATGGATGCCTTATCGATGAGTGTACTGTCACATGTGAATTCTGGCATCCACAACACAGTGAGAGGGCCATCCATTCCTAGATTCCATCCTCATTCCCTCCCTGAGTATCATGATGGTCTAGCTTGTGGCAGTCCTTACAACCTTTCAAGAACCTTTAGCAATGTTTCTGGTAATATGGGTCCAGGAGTAACAGATAGCTCTGACAGCAGGCACACTCTGGGATTTGGTTCACCTGGGAAATTGACAGACTTTAATGGAGGAGGAAATGGGAGCCTTCCTAATCATGGGCTTTATCACATGTGGAGCGGATCGAATTTGCACCAGCAAACTCCACCAGGTCCAATGGTTTGGCAGAAAACACCATCATTTGTTAATGGTGCTCATGCTCCTTGTCTCCAGCAGATGCCTGGCTTTCCCAGATCATCTCATATGCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCGGTTGTGACTGCCTCCCTGTGGGACAGACGACATTCTTATTTGGCAGAGTCTCCTGAATCCTCTGGTTTTCACATGGGTTCCCTTGGTAGTACAGGTTTTCCTGGCACATGGCAATTGCATCCTCCTGAATTTTCTTCTCACAAAATGTTTCCTCATGTTGGTGGGACTGGCATGGATATATCACCCAATGCTGGGCAGAGCTCCCCAAATCAGTTGTCACATGTTTTCCCTGTGAGACATCCCATGGCGTCAATGTCTAAATTTGACCCTATGAATGAAAGAATGAGAAACCTTTATCACCGTAGAAGTGATGCTAACACTAACAGTTCTGACAAAAAGCAATTTGAACTTGACCTAAGTCGCATATTGGACGGAGAAGACACACGAACAACACTCATGATTAAGAATATTCCCAATAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGACTTTTTGTATTTGCCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCTTTCATCAACATGACTGATCCTAGTCAGATTATTCCCTTCCACAAGGCTTTTAACGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTGGCTTCACTTGCCTATGCTCGAATTCAGGGAAAAACTGCTCTTATTGCACATTTCCAAAATTCGAGCTTGATGAATGAAGATAAACGTTGCCGCCCTATACTTTTTCATACAGAGGGCCCAAATGCTGGTGATCCGGAGCCTTTTCCCATGGGTACCAATATTAGACTGAGGTGTGGAAAATCTCTTGCAAGGAGCCCATCAGCTTCGACTAATGGAGAGGAGTCCTCCAATGGGATAAGTTCTTCAATGGGCTCTTCGAAAAACTCAGACTGA 2832 0.4294 MPFEIMDQRAVSASSHFFDDISFCSEKNAGLRGPKSVHDHCHQGKHGMAASRGSILNALSPQDISANTGWSKSPTGLSGDTIKKLHVGEEGNVDMFKASKEALNHHPRSQSNERMQPASNPYGLIGNKILTNAASRESSLFSSSLSEIFTRKLSCTENDVLPQQPVTVGSLPDEEPYKSLEEIEAETIGNLLPDEDDLFSGVADDLGFNTLAKTGDDLEDFDLFSSGGGMELEGVEHGTSGKRTCGPDGDPGCFGGFKGKLPFGEHPSRTLFVRNINSNVEDSELKALFEQYGDVRTTYTACKHRGFVMISYYDIRAAQNAMKALQNRSLRSRKLDIHYSIPKVNAPEKDISHGTLLLSGLDSSISDDELLQIFGFYGEIREIYKAPEMNYEKFIEFYDVRAAEAALRALNKSEIAGKQIKIEPSHPRGSNTTSLMEQSQKGQNESEHSQSMGDSLSLGQNAITSSGVIASGCLDNGSDQGFPTAIRQTMDALSMSVLSHVNSGIHNTVRGPSIPRFHPHSLPEYHDGLACGSPYNLSRTFSNVSGNMGPGVTDSSDSRHTLGFGSPGKLTDFNGGGNGSLPNHGLYHMWSGSNLHQQTPPGPMVWQKTPSFVNGAHAPCLQQMPGFPRSSHMLRASHIDHHVGSAPVVTASLWDRRHSYLAESPESSGFHMGSLGSTGFPGTWQLHPPEFSSHKMFPHVGGTGMDISPNAGQSSPNQLSHVFPVRHPMASMSKFDPMNERMRNLYHRRSDANTNSSDKKQFELDLSRILDGEDTRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPSQIIPFHKAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGTNIRLRCGKSLARSPSASTNGEESSNGISSSMGSSKNSD 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0460 943 CDD RRM1_MEI2_like 268 343 IPR034453 -
Mibi09g0460 943 SMART rrm1_1 355 423 IPR000504 GO:0003723
Mibi09g0460 943 SMART rrm1_1 270 338 IPR000504 GO:0003723
Mibi09g0460 943 SMART rrm1_1 778 854 IPR000504 GO:0003723
Mibi09g0460 943 CDD RRM3_MEI2_like 779 864 IPR034454 -
Mibi09g0460 943 MobiDBLite consensus disorder prediction 912 943 - -
Mibi09g0460 943 Pfam RNA recognition motif 2 776 872 IPR007201 -
Mibi09g0460 943 FunFam Protein MEI2-like 1 353 449 - -
Mibi09g0460 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Mibi09g0460 943 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 421 IPR000504 GO:0003723
Mibi09g0460 943 Gene3D - 352 451 IPR012677 -
Mibi09g0460 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Mibi09g0460 943 PANTHER RNA RECOGNITION MOTIF-CONTAINING 109 935 - -
Mibi09g0460 943 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Mibi09g0460 943 MobiDBLite consensus disorder prediction 916 943 - -
Mibi09g0460 943 MobiDBLite consensus disorder prediction 425 457 - -
Mibi09g0460 943 MobiDBLite consensus disorder prediction 418 457 - -
Mibi09g0460 943 SUPERFAMILY RNA-binding domain, RBD 266 429 IPR035979 GO:0003676
Mibi09g0460 943 FunFam MEI2-like protein 5 isoform 2 258 352 - -
Mibi09g0460 943 SUPERFAMILY RNA-binding domain, RBD 778 862 IPR035979 GO:0003676
Mibi09g0460 943 Gene3D - 258 351 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0460 Mibi-ChrMibi09 6002676 6008459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0460 264 440 Eukaryotic Initiation Factors Gene Family AT3G16380 24.876 2.74e-08 55.8