Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0443 ATGAATTTTGTTAGAAATGGAGTGAGCAGATTGCCTCCTGGTTTTCGGTTCCAGCCAACAGATCAAGAACTCGTGTTTCAGTACTTGAAGTGCAAGATCTTCTCTCTTCCTTTGCCTGCTACCATTATTCCTGACCTCAATCTCTGCAACTTTGATCCTTGGGATTTGCCAGGTAACAGTGATGAGGAAGAGAGGCACTTTTTCAGTCCAAAGGAAGCGAAATATCGAAATGGGAATCGCATGAACCGAACAACCGTATCTGGATATTGGAAGGCAACAGGATCAGACAAGAGAATAACTTGTTCTTCAAGAAACAACAACGTCATTGGCATAAGAAAAACACTTGTTTTTTACCAAGGCAATTCCCCAAATGGCTCTAAAACTGACTGGATCATGCACGAATATCGCCTTGTTTCTGCTTCTTCCAAGTCTGAGGAGGTCGGAGATTGGGTTCTCTGCCGAATATCCCTAAAAAAAACTAACAATAATGGTGGTGATTCGAGGAGGACAAGGACCAGTCACACCAAATCCGAGTCTTTCTCTCCTCACTGGCTTCTACTACTAGTGGGTGTGAGAGACTGTGTGTGTAGAGAGAGAGAGAGAGAGAGAGAGGTTTTGGACAAAGGAAAGTTAAAAAGTTTCGACCTTTATTCCTCTTTCTGCTTCCTCTCCATTGAAGTTCAGAAGATGATCGATTTTGCTCGTGTTCAGAAGGAGCTCGTCGATTGCGGCAAAGACCATGAGGGCTCTGGCATCAGAGTTAATGTCAATGGAGATAGCCTTGCTCGCTTGATCGGAACCATTCCTGGCCCCATCGGGACTCCGTATGAAGGGGGCATTTTCAAAATTGACATTACCATACCAGATGGATACCCCTTTGAACCTCCCAAAATGCAGTTTGCGACGAAAGTCTGGCACCCTAACATCAGCAGTCAGAGTGGAGCTATTTGCTTGGACATCTTGAAGGATCAATGGAGCCCTGCGCTGACACTGAAAACTGCGCTGCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAGCCTGATGATCCTCAAGATGCTGTTGTAGCGCAACAGTATCTCAAAGATTACCAGACATTTGTTGGCACCGCTAGGTATTGGACTGAAGCTTTTGCCAAGCCATCATCTCTTGGGATTGAGGATAAGGTGAAGAAGCTTGCAGAGATGGGATTCGCTGAGGCTCAGGTGAGGAGTGCTTTGGAAGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGCTTTGCTCTTAG 1269 0.4571 MNFVRNGVSRLPPGFRFQPTDQELVFQYLKCKIFSLPLPATIIPDLNLCNFDPWDLPGNSDEEERHFFSPKEAKYRNGNRMNRTTVSGYWKATGSDKRITCSSRNNNVIGIRKTLVFYQGNSPNGSKTDWIMHEYRLVSASSKSEEVGDWVLCRISLKKTNNNGGDSRRTRTSHTKSESFSPHWLLLLVGVRDCVCREREREREVLDKGKLKSFDLYSSFCFLSIEVQKMIDFARVQKELVDCGKDHEGSGIRVNVNGDSLARLIGTIPGPIGTPYEGGIFKIDITIPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVGTARYWTEAFAKPSSLGIEDKVKKLAEMGFAEAQVRSALEAVGGDENLALERLCS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0443 422 Pfam Ubiquitin-conjugating enzyme 235 373 IPR000608 -
Mibi09g0443 422 SUPERFAMILY UBC-like 233 379 IPR016135 -
Mibi09g0443 422 Gene3D - 378 422 - -
Mibi09g0443 422 Pfam No apical meristem (NAM) protein 12 137 IPR003441 GO:0003677|GO:0006355
Mibi09g0443 422 CDD UBCc 235 374 IPR000608 -
Mibi09g0443 422 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 231 379 IPR000608 -
Mibi09g0443 422 SUPERFAMILY UBA-like 385 422 IPR009060 GO:0005515
Mibi09g0443 422 SMART ubc_7 234 379 - -
Mibi09g0443 422 SUPERFAMILY NAC domain 7 158 IPR036093 GO:0003677|GO:0006355
Mibi09g0443 422 Gene3D Ubiquitin Conjugating Enzyme 229 377 IPR016135 -
Mibi09g0443 422 SMART uba_6 385 422 IPR015940 -
Mibi09g0443 422 CDD UBA_II_E2_UBC27_like 386 421 IPR041974 -
Mibi09g0443 422 PANTHER NAC TRANSCRIPTION FACTOR 56 11 173 - -
Mibi09g0443 422 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Mibi09g0443 422 FunFam ubiquitin-conjugating enzyme E2 27 230 381 - -
Mibi09g0443 422 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Mibi09g0443 422 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 305 321 IPR023313 -
Mibi09g0443 422 Pfam UBA/TS-N domain 386 420 IPR015940 -
Mibi09g0443 422 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 384 422 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0443 Mibi-ChrMibi09 5704081 5709562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0443 1 163 NAC Transcription Factor Family AT5G13180 63.415 5.12e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mibi09g0443 UQ_con 2.1e-41 CL0208