Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0364 ATGTTTCTCATGCCTTGGCTTGTAACAAAGAAGGAAGGGGATAACGAGGCGTGGGGACTGGGGAAGAAGGAGGGAGTACTTCCTGAAAATAGAAGAAAAGAAAAGAAAAGTAACGCGCTTTTGGGGAGAATGGAGTCTTCTGAATCCGAATCAACGGCAGTTTCGAATTCCAACGACAACCCAGAATTGGGTTTCTCGACCCCATCTTTCCCTAGTTCTGATCACGATTCTGAGACCTCAGATCTTAATCATGATCCTCAGCTCGATGTTCTTTACTTGGAGTTTCAGAAAAAGTTGGTTTTGAAGGATAAGGATGAAGAAGAAGAAGAAGAAGAAGGAGAGACTGAGAACAAAGATTGTAACTTTGATGGTAGTGAGGAAGTAGTGTGTGATGAACACGCTGCTGCTCCTGAGGAATATCATGAGGTAGACGGATGGGGTGAATGTGACGATAATTGGGGTGAAAATGAGGACAATAATTGGACTACAAATGTGAACGGTAATGAGATTGATGAGGAAAGTGAAGATTATGATTTGGCTGCTGATGAAGTGGAGAGAAAAGAAGAGAGAAGTGGTGTTAGTAATCACCACTACCCGTTAAGGCCCGAAGCAGAAGATTGTGCATTCTATCTGAAAACTGGAACTTGCAAATACGGATTCAATTGCAAGTTTAATCACCCTGTTAATAGGAGGAAAAATCCGGTTGATAAGGAGAAGGCGGAAGATAGAGAAGAATCAGCTGATAGATTGGCGCATCCAGAATGCAAGTATTATCTATCATCGGGAGGATGTAAGTTCGGAAAAGCTTGTAAATATAACCATTCAAGAGGAAAATGTTCAGTAGTCCCAGTTCTAGAGTTTAATTTTCTTGGTCTGCCTATTCGTCGGGGGGAGAAAGAGTGCCCTTATTACATGCGTACGGGCTCTTGTAAATTTGGAACAAACTGCAAATTTAATCATCCAGATCCTACAGTCGTCGGAGGAGGTGATCTTCCTGCAACATATGGTAATGGTGGGTCTATATCATTACAACGAATCTCACAGCCATCTGCGCTCTCCTGGTCTTCTCCGAGAACATCAAATGAAACTGCTGCTTTTATGCCAATGATGTTGTCACCTACTCAAGGCGTTTCTCCCCGAAGTTCTGAATGGAATTTGTACCAGGCACCTGTCTACCTTCCTGAGGGGAGCATGCGCCCACCTTCTGCATATGTTATGAACAACCCAGAGCTTGAGAAAAATATTTATATGCATTATCTGAAGAAGATGCAGGTTGAAGAGTTTCCTGAAAGGCCTGGGGAGCCTGAATGCAGTTACTTCATGAAAACTGGGGATTGCAAGTACAAATCTAATTGTAAATTTCACCACCCAAGGAATCGGATTACAAAGTTACCCTCTGGTACATGCACCCTCAGTGACAAGGGTCTTCCTTTGAGACCTGACCAAAATGTCTGCACGCATTACGGTCGCTATGGAATCTGCAAATTTGGACCAGCTTGTAGGTTTGACCACCCAATAAACCAATCTCCCTTTTTAGGGCCTCCATTTGATCATCAATCGCCCTACTCAAACTCTGCTGGAGTTGAACTGGCTGAAAATGGAGGGGTAACTGGGTAA 1617 0.4335 MFLMPWLVTKKEGDNEAWGLGKKEGVLPENRRKEKKSNALLGRMESSESESTAVSNSNDNPELGFSTPSFPSSDHDSETSDLNHDPQLDVLYLEFQKKLVLKDKDEEEEEEEGETENKDCNFDGSEEVVCDEHAAAPEEYHEVDGWGECDDNWGENEDNNWTTNVNGNEIDEESEDYDLAADEVERKEERSGVSNHHYPLRPEAEDCAFYLKTGTCKYGFNCKFNHPVNRRKNPVDKEKAEDREESADRLAHPECKYYLSSGGCKFGKACKYNHSRGKCSVVPVLEFNFLGLPIRRGEKECPYYMRTGSCKFGTNCKFNHPDPTVVGGGDLPATYGNGGSISLQRISQPSALSWSSPRTSNETAAFMPMMLSPTQGVSPRSSEWNLYQAPVYLPEGSMRPPSAYVMNNPELEKNIYMHYLKKMQVEEFPERPGEPECSYFMKTGDCKYKSNCKFHHPRNRITKLPSGTCTLSDKGLPLRPDQNVCTHYGRYGICKFGPACRFDHPINQSPFLGPPFDHQSPYSNSAGVELAENGGVTG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0364 538 Gene3D - 172 237 - -
Mibi09g0364 538 ProSiteProfiles Zinc finger C3H1-type profile. 201 229 IPR000571 GO:0046872
Mibi09g0364 538 MobiDBLite consensus disorder prediction 513 538 - -
Mibi09g0364 538 MobiDBLite consensus disorder prediction 102 124 - -
Mibi09g0364 538 ProSiteProfiles Zinc finger C3H1-type profile. 249 277 IPR000571 GO:0046872
Mibi09g0364 538 SUPERFAMILY CCCH zinc finger 253 279 IPR036855 GO:0046872
Mibi09g0364 538 Coils Coil 170 190 - -
Mibi09g0364 538 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Mibi09g0364 538 MobiDBLite consensus disorder prediction 42 76 - -
Mibi09g0364 538 Gene3D - 420 509 - -
Mibi09g0364 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 321 IPR000571 GO:0046872
Mibi09g0364 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 253 276 IPR000571 GO:0046872
Mibi09g0364 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 433 458 IPR000571 GO:0046872
Mibi09g0364 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 482 505 IPR000571 GO:0046872
Mibi09g0364 538 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 205 227 IPR000571 GO:0046872
Mibi09g0364 538 SMART c3hfinal6 479 506 IPR000571 GO:0046872
Mibi09g0364 538 SMART c3hfinal6 431 458 IPR000571 GO:0046872
Mibi09g0364 538 SMART c3hfinal6 201 228 IPR000571 GO:0046872
Mibi09g0364 538 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Mibi09g0364 538 SMART c3hfinal6 249 276 IPR000571 GO:0046872
Mibi09g0364 538 ProSiteProfiles Zinc finger C3H1-type profile. 479 507 IPR000571 GO:0046872
Mibi09g0364 538 SUPERFAMILY CCCH zinc finger 200 230 IPR036855 GO:0046872
Mibi09g0364 538 PANTHER PROTEIN PHOSPHATASE RELATED 47 521 - -
Mibi09g0364 538 SUPERFAMILY CCCH zinc finger 297 323 IPR036855 GO:0046872
Mibi09g0364 538 MobiDBLite consensus disorder prediction 18 41 - -
Mibi09g0364 538 Gene3D - 244 327 - -
Mibi09g0364 538 SUPERFAMILY CCCH zinc finger 477 505 IPR036855 GO:0046872
Mibi09g0364 538 ProSiteProfiles Zinc finger C3H1-type profile. 431 459 IPR000571 GO:0046872
Mibi09g0364 538 MobiDBLite consensus disorder prediction 18 88 - -
Mibi09g0364 538 SUPERFAMILY CCCH zinc finger 436 461 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0364 Mibi-ChrMibi09 4576383 4581224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0364 427 531 C2H2 Transcription Factor Family AT3G02830 42.857 1.09e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi09g0364 zf-CCCH 2.1e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0364 09 4576383 4581224 Mibi09g0364 09 4576383 4581224 ECH