Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0352 ATGGATGGGAGGCGGCATTCAGTTGATGTTCCTATTTCGAAGACTCTTGTAGCGTTGAGGAGAGTGAGGTCATTGAGGGATCCATCTACGAATTCTATGAGTAAACTTTGTTCTTCGATGGATAATCTTCACTGGGAAAACAGTTCAGGCAATGGGATTTGCCTGCGGTTCTTGGAAGCTTCTCGTGCTTGTGATTCTGATGATAATGGTGCATTAAGGTCAAAGAATTTCAGTTGCACCATGCGAAAAGAGCACGATGCTGCTGAGTCTGATGATAATGGTGCATTAAGGTCTAAGCTGAAGTCTTGTCCTGAAGGGGAGCAGGATGAAGAACTAGCACATTCTAATCTGAATCAGGAAGGCAATTCCGGAGTTAAGTCGACAGGTGATAGCTGCTATAGTAACCATAGACGCAAGGAATTGGATATAGCATCCTTTGTGCCACCTAGCAATGAGGCAACTTCTGGATCATCAAAGTTAGGGGCAATTGATCATTCTATGTTGACTAGAAGAACTCCATGTAAGAATCAAGTGAAATCATCCGAAGTTTTGGGTAATATTGCAGGTCTTAGAGGTAGTCCATGCCTTTCAGTTGGTGAAGCTTTCTCAGCTTATAGTTCTTCGGCCAATATGAATCAAGATGCAGATATTGTGGATGATGATCACCATGGATGTGGAATAAGCTGCTGTTGGTCAAAATCACCACGGTTCAGAGAATCAAATGCATATTCTGATATAGAAGACCGTCCCCTGATAGCCTGGCACACAGATGAGACACCACTTTATGGACATAAGAACATGAGACACATTGGTGGTGAAATTAGTCCAAATTTTGAAACTCCTAGAAGTTTATGTATGAAATTCAGGCCAAAATCTTTTAATGATTTGGTTGGACAAAACGTGGTAGCGAGGTCTCTTTTGGGTGCCATCTTTAAGGGAAGGGTTACCTCATTCTATCTTTTCCATGGTCCTCGCGGTACTGGCAAGACATCTGCATGTAGGATCTTCGCTGCTGCACTGAATTGTCTCTCCCTGGAGGAGCAAAGGCCATGTGGTCTGTGCAGAGAGTGCGTTTTGTTCTTTTCAGGTAGAAGTAAAGATGTTAAAGAAGTTGATTCTGTGAGATTAAACCGTATTGACAAAGTAAAATCCCTTGTTAAGAATGCAAGCATCCCTCCAGTTTCCTCACGTTTTAAGATATTTATTGTTGATGAGTGCCAGTTGATCATCGGGGAGACGTGGGCAAGTCTTTTGAATAGCCTAGAGAGCCTTTCTCAACATGTGGTTTTTATCATGATCACCCCAGACTTGGACAAACTTCCCCGAAGTGCAGTTTCCAGGGCCCAGAGGTATCACTTCCCTAAGATAAAAGATGCTGACATTGCAAGTAGATTGGAAAAAATTTGCCTAGAAGAAGGTATTGATTTTGAACAGGATGCTTTGGACTTCATCGCTGCTAAATCATGTGGTTCACTCAGGGATGCAGAGATCATGCTCGATCAGCTAAGCTTGCTTGGTAAAAGAATCACAATTTCCTTAGCCTATGAGCTTACTGGTATAATTTCTGATGATGAATTGCTTGAATTACTGGATCTGGCTTTGTCTTCTGACACTTCAAATACTGTTAAAAGAGCGCGAGAGTTAATGAGATCAAGGGTGGATCCCTTACAACTTATTTCGCAGCTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGATGACGGTGGTTCTGAAGTCAGAATGAGGTTTTATAGTAGTCATAAATCTGAAGCAGACCTTCAGAAATTAAATCATGCATTGAGAATGCTATCTGAAACAGAGAAGCAATTACGAATTTCCAAGAACCAATCAACTTGGTTCACAGTAGCACTCCTGCAGTTAAGCTCTGCAGAACATTCTTCTATCGAAGCAAATGATACTAAATTAAGAGATGCATGCAATGGAGATGGTGATTTCTGCAGTACGTCATCTACAGGGGATAGCAGGAAGCATCTTGCCTCAGTTCAGTATGATAAAAAGTTGTTTAGATCAGGACAACAGGATCACACATTAAATTCCATATGGTATAAAGCGACAGAATCATGCCAATCTAACAGACTAAAGAATTTTCTTAGGAAACAGGGGAAGTTGTCTTCGCTTTGTGTTAATCGCGATCTAGCAATTGCTGAGTTGGATTTCCAGCATCGTAGCTACGTTTGTAGGGCTGAGAAGTCATGGAAAATGATTGCCAGATCCCTGCAGCTCATGTTAGGCTGTAACATAGAGCTCAGGATCAATCTTGTACCTTGCACTTCTGATTCTACATATGCCAAGTTGAAGAGGTCATCTTTCAGTTTTTTTAGTTGTTCCCGTAGAATTCACCGAAAAGCACTCTCAGATAATGAGCGAGGAAGCGAACCAGACTACGCTGATCATACCTCACAGAAAGCTATGATAAAGGATAGAACTTTAACTTGTACATCTGATTGTGGATCTCAGATGGAAAAAGCTGAGCCTTATCATGGGATGGAGGTTTTAACTGCATTGAGAGATGGTGAAGGAAATTTGCTGAGCTCAAGGAAGAGTTTGTTAAATAGTTCAACTTCAAGGACCCCAAGTTCTGGGGTTGATTCCTCTAAGGAAGAGGGATTTGACTATGCACACCTAGTTTCATCAAACCCTGATTCAGACAACCAATCAAAATGTTTCCCTCGAATTTTCTGGATTCATAAGAAGTTACGCTCTCCAGATCGATCTCAGTTGGTTTTCGAGGGAACCCAACAAAAAAAGGAATTTGTTTTATCCATCCCAAATTGCACATGTTCTGAGACATATAGTTATGCTAGTGAGCCATGTGTTTTCTCCACCAGCTCTAACAATTGTACCAAAGCCGCCCAAGATGAGAAAAGTCAGAAATTGGAATCAGATATGCTTTGCTGGAGAACCCCGAGATCTCCCTTGAGGAAGTCATGGCATGCGGGGCTTCAGCAGCACAAGTCGCACACAGCAGGGAGATTTCTTTCCTGTGCCAAGTAG 3021 0.4194 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNSMSKLCSSMDNLHWENSSGNGICLRFLEASRACDSDDNGALRSKNFSCTMRKEHDAAESDDNGALRSKLKSCPEGEQDEELAHSNLNQEGNSGVKSTGDSCYSNHRRKELDIASFVPPSNEATSGSSKLGAIDHSMLTRRTPCKNQVKSSEVLGNIAGLRGSPCLSVGEAFSAYSSSANMNQDADIVDDDHHGCGISCCWSKSPRFRESNAYSDIEDRPLIAWHTDETPLYGHKNMRHIGGEISPNFETPRSLCMKFRPKSFNDLVGQNVVARSLLGAIFKGRVTSFYLFHGPRGTGKTSACRIFAAALNCLSLEEQRPCGLCRECVLFFSGRSKDVKEVDSVRLNRIDKVKSLVKNASIPPVSSRFKIFIVDECQLIIGETWASLLNSLESLSQHVVFIMITPDLDKLPRSAVSRAQRYHFPKIKDADIASRLEKICLEEGIDFEQDALDFIAAKSCGSLRDAEIMLDQLSLLGKRITISLAYELTGIISDDELLELLDLALSSDTSNTVKRARELMRSRVDPLQLISQLANLIMDILAGKCDDGGSEVRMRFYSSHKSEADLQKLNHALRMLSETEKQLRISKNQSTWFTVALLQLSSAEHSSIEANDTKLRDACNGDGDFCSTSSTGDSRKHLASVQYDKKLFRSGQQDHTLNSIWYKATESCQSNRLKNFLRKQGKLSSLCVNRDLAIAELDFQHRSYVCRAEKSWKMIARSLQLMLGCNIELRINLVPCTSDSTYAKLKRSSFSFFSCSRRIHRKALSDNERGSEPDYADHTSQKAMIKDRTLTCTSDCGSQMEKAEPYHGMEVLTALRDGEGNLLSSRKSLLNSSTSRTPSSGVDSSKEEGFDYAHLVSSNPDSDNQSKCFPRIFWIHKKLRSPDRSQLVFEGTQQKKEFVLSIPNCTCSETYSYASEPCVFSTSSNNCTKAAQDEKSQKLESDMLCWRTPRSPLRKSWHAGLQQHKSHTAGRFLSCAK 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0352 1006 CDD AAA 297 447 - -
Mibi09g0352 1006 FunFam DNA polymerase III subunit gamma/tau 457 519 - -
Mibi09g0352 1006 FunFam Protein STICHEL-like 1 isoform C 520 633 - -
Mibi09g0352 1006 MobiDBLite consensus disorder prediction 115 131 - -
Mibi09g0352 1006 Gene3D - 277 454 IPR027417 -
Mibi09g0352 1006 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 285 693 - -
Mibi09g0352 1006 SMART AAA_5 315 475 IPR003593 -
Mibi09g0352 1006 SUPERFAMILY post-AAA+ oligomerization domain-like 526 629 IPR008921 GO:0003677|GO:0006260
Mibi09g0352 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 506 IPR027417 -
Mibi09g0352 1006 MobiDBLite consensus disorder prediction 83 132 - -
Mibi09g0352 1006 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 283 629 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mibi09g0352 1006 MobiDBLite consensus disorder prediction 83 114 - -
Mibi09g0352 1006 Pfam DNA polymerase III, delta subunit 299 456 - -
Mibi09g0352 1006 Gene3D - 520 632 - -
Mibi09g0352 1006 Coils Coil 598 618 - -
Mibi09g0352 1006 CDD HLD_clamp_pol_III_gamma_tau 456 519 IPR045085 -
Mibi09g0352 1006 Gene3D - 457 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0352 Mibi-ChrMibi09 4376937 4381810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0352 274 568 Core DNA Replication Machinery Family AT1G21690 23.203 7.46e-14 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0352 09 4376937 4381810 Mibi09g0352 09 4376937 4381810 ECH