Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0350 ATGACCACCACCACCACAACCACCTTCTTCCTCCTCTGTTTTCTCCTCATCCCCACTCTCATTTCTTCTTCCCCTTTCCACGACCCTGAATCCATCGTCCAAGAGGTTAACAGGAAAATCAATGCCTCTGTTTCTAGGCGAAATTTAGGCTACCTCTCATGCGGAACTGGAAATCCAATCGACGATTGCTGGAGATGCGATCCAAATTGGGAGAAAAACAGGCAGAGGCTAGCCGATTGTGCGATAGGATTCGGAAAGAACGCAATCGGAGGGAGAAACGGCAAAATCTACGTCGTGACCGACTCCGGCGACGACGACCCGGTGAGCCCCCGGCCGGGGACTCTCCGGTACGCCGTGATCCAAGACGAACCGTTATGGATCATATTTGCAAGGGACATGGTGATTCAGCTTAAGGAAGAATTAATCATGAATTCTTTCAAGACAATTGATGGTCGTGGAGCTAGTGTTCATATTGCTGGTGGGCCCTGCATAACGATCCAGTATGTAACGAACATTATAATACATGGGATTCACATTCATGATTGTAAGCAAGGGGGGAATGCTATGGTGAGGAGCTCCCCACGGCATTATGGGTGGAGGACCGTATCGGACGGTGATGGTGTGTCCATCTTTGGTGGGAGCCACGTGTGGGTAGATCATTGCTCGTTGTCTAACTGTAAAGATGGCTTGATTGATGCTATCATGGGGTCCACCGCTATTACCGTCTCTAACAATTACATGACGCAGCATGATAAGGTCATGTTACTTGGTCACAGTGATTCTTACAGTCAAGACAAGAACATGCAAGTCACCATCGCTTTTAACCACTTTGGAGAAGGCCTTGTTCAAAGAATGCCAAGATGCAGACTTGGTTATTTCCATGTGGTGAACAATGACTATACTCATTGGGAAATGTATGCCATTGGAGGAAGTGCAAACCCTACCATCAATAGCCAAGGCAATAGATTTGTGGCCCCCAATAACATGTTCAGCAAAGAGGTGACAAAACATGAGGATGCACCGGAGAATGAATGGAAAGGATGGAATTGGAGATCAGAAGGTGACTTGTTGCTAAACGGTGCGTTTTTTAGGTCATCTGGTGCTGGAGCATCTTCTAGCTATGCAAGGGCTTCTAGTTTGAGTGCAAGACCATCTTCTCTTGTGGCTTCTCTCACTTCTGGTGCTGGAACCCTCACTTGCAGAAAAGGTTCTCGCTGCTGA 1221 0.475 MTTTTTTTFFLLCFLLIPTLISSSPFHDPESIVQEVNRKINASVSRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRNGKIYVVTDSGDDDPVSPRPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIMGSTAITVSNNYMTQHDKVMLLGHSDSYSQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNNMFSKEVTKHEDAPENEWKGWNWRSEGDLLLNGAFFRSSGAGASSSYARASSLSARPSSLVASLTSGAGTLTCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0350 406 FunFam Pectate lyase 57 399 - -
Mibi09g0350 406 SMART amb_all 132 329 IPR002022 -
Mibi09g0350 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Mibi09g0350 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Mibi09g0350 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Mibi09g0350 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Mibi09g0350 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Mibi09g0350 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Mibi09g0350 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Mibi09g0350 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Mibi09g0350 406 SUPERFAMILY Pectin lyase-like 37 400 IPR011050 -
Mibi09g0350 406 PANTHER PECTATE LYASE 18-RELATED 26 404 IPR045032 GO:0030570
Mibi09g0350 406 Pfam Pectate lyase 141 323 IPR002022 -
Mibi09g0350 406 Gene3D - 57 399 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0350 Mibi-ChrMibi09 4350721 4352452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0350 1 406 Polysaccharide Lyase AT4G24780 83.088 0.0 671