Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0344 ATGTCTATCACTTCTATACCTTCCTTGAAGACCTTAACAATGGCAGAATTACGCCTTCTCTCTCTTCCCTCTTTAATCTCCAACAAAACTAAACACTCTTTCGTCTCTATTCCTTCCAAGCCTTTCAAACTTCATGATTCTAACCCCAAAGCTTCCCTCTTTCTACCATCTCTGTCCCTCACGAAGAAAACCCACAATTTATCTATACTCACATTCGTAGCCCAGACTTCGGATTGGGCTCAACAGGACGAAGACAACACTGCCACCATAGATGAAGAGGAAAATCAAGAAGTGGATGACGCAGAAGCTCGTCTTTCGGATTGGGAGGTTGATGGTGAAGGTGGGGGAATTGAGCGTAGCGAGGGTGAAGGAGAAAGTAATGAAGATGAGGAATTTTTGAAGGATGGGGATTTTTCAGAACCACCTGAAGATGCAAAGCTATTTGTTGGTAATTTGCCTTATGATGTTGATAGTCAGAGATTAGCCATGCTTTTTGAGCAGGCTGGAACTGTGGAAATTGCCGAGGTTATTTATAATAGGAGCACTGACCAAAGTCGTGGGTTTGGATTTGTGACGATGAGTACAGTTGAAGAAGCAGAGAAAGCTGTTGAGAAGTTTCACCGCTATGATCTAGATGGAAGACTGTTGACTGTTAACAAGGCCGCACCAAGAGGAGCACAACCAGAACGCCCACCCCGGGCCTTTGAACCATCCTTTAGAGTCTACGTGGGCAACTTGCCATGGGATGTTGATAATGGTCGCCTGGAGCAGATTTTCAGCGAACACGGTAAGGTTGACAGTGCCCGGGTAGTCTATGACAGAGAGACTGGTCGATCTCGTGGTTTTGGCTTCGTCACAATGTCCAGTGAAACAGAAATGAACGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGACGGGAGGGCAATTAGAGTGAATGTTGCTGAGGAAAGGCCAAGGCGAGGCGGCTTCTGA 975 0.4615 MSITSIPSLKTLTMAELRLLSLPSLISNKTKHSFVSIPSKPFKLHDSNPKASLFLPSLSLTKKTHNLSILTFVAQTSDWAQQDEDNTATIDEEENQEVDDAEARLSDWEVDGEGGGIERSEGEGESNEDEEFLKDGDFSEPPEDAKLFVGNLPYDVDSQRLAMLFEQAGTVEIAEVIYNRSTDQSRGFGFVTMSTVEEAEKAVEKFHRYDLDGRLLTVNKAAPRGAQPERPPRAFEPSFRVYVGNLPWDVDNGRLEQIFSEHGKVDSARVVYDRETGRSRGFGFVTMSSETEMNDAIAALDGQSLDGRAIRVNVAEERPRRGGF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0344 324 Gene3D - 74 226 IPR012677 -
Mibi09g0344 324 Gene3D - 227 322 IPR012677 -
Mibi09g0344 324 MobiDBLite consensus disorder prediction 101 122 - -
Mibi09g0344 324 CDD RRM_HP0827_like 146 223 - -
Mibi09g0344 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Mibi09g0344 324 FunFam 31 kDa ribonucleoprotein, chloroplastic 74 228 - -
Mibi09g0344 324 Coils Coil 91 111 - -
Mibi09g0344 324 PANTHER OS02G0815200 PROTEIN 36 319 - -
Mibi09g0344 324 CDD RRM_HP0827_like 240 316 - -
Mibi09g0344 324 SUPERFAMILY RNA-binding domain, RBD 141 233 IPR035979 GO:0003676
Mibi09g0344 324 MobiDBLite consensus disorder prediction 123 137 - -
Mibi09g0344 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 317 IPR000504 GO:0003723
Mibi09g0344 324 SUPERFAMILY RNA-binding domain, RBD 230 322 IPR035979 GO:0003676
Mibi09g0344 324 MobiDBLite consensus disorder prediction 88 140 - -
Mibi09g0344 324 SMART rrm1_1 240 313 IPR000504 GO:0003723
Mibi09g0344 324 SMART rrm1_1 146 219 IPR000504 GO:0003723
Mibi09g0344 324 FunFam 31 kDa ribonucleoprotein, chloroplastic 229 323 - -
Mibi09g0344 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 216 IPR000504 GO:0003723
Mibi09g0344 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 311 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0344 Mibi-ChrMibi09 4308739 4311535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0344 127 321 Eukaryotic Initiation Factors Gene Family AT3G16380 34.804 1.99e-22 95.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0344 09 4308739 4311535 Mibi13g0539 13 7248072 7249935 CCT
Mibi09g0344 09 4308739 4311535 Mibi13g0539 13 7248072 7249935 ECH
Mibi09g0344 09 4308739 4311535 Mibi09g0344 09 4308739 4311535 ECH