Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0301 ATGAACCCTTACGACAACAGATATTCAGACTCGTCTTCCTATCGCAACCGCAGGAGTGATTTAATCGGATCTATGCCGCCGTCGGTTCCTCCGATGGTCGGTGGTGCCAGCTCGAGCCACGGCCGTGGAGGTCATGCTCCGTATGGTAATAATATGGGTGGATTGCCGCCGTTCATGCCTCCTCCTGGAGGATTTGACATAGGTCGTGGTGGTACTAGCCAAAGGGGTTTTAGTGGTAGACTAGGAAACGGTCATGTTGGTGATAGAAAAGATGACCTAGGTCGTCGTGGCGGTGGGAGAGATCGTGGAGGTGGTAGATTTGGTGGACCCCATGGGGATAATAAGAGCTCAGGTAGAGGAAGAGGTTTTGGAGGTAGGGGAGGAGGAAGGCGTGGTGGATCTTCCAAGGATGATTTGGATAACTTGGCACTTCCCAAGCCAGTTTTTAGGAATTTGGTTCCGTTTGAGAAGAATTTTTACATCGAAAGCCCGTCGGTTCGGGCGATGTCTGAGCATGATGTTATGGCTTATCGTGCCAGTAGGGACATCACAGTGCAAGGGAGTGATGTTCCCAGGCCGATTCGGACTTTTCAAGACGCGAATTTTCCTGATTGCTGCCTTGATGTTATTGCCAAATTGGGTTTTGTGGAGCCTACACCAATTCAAGCTCAAGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTGGTTGGCATTGCTGAGACTGGCTCAGGAAAAACGCTCGCATATCTTCTTCCTGCTTTAGTGCATATCAGTGCACAACATCCATTGGTACAAGGTGAAGGTCCCATTGCCTTAGTTTTGGCTCCAACTAGAGAGTTAGCTGTACAAATTCAGGAAGAAGCTCTAAAATTTGGCACTCGAGCAAATATTAGAAGCACTTGTATATACGGTGGTGCTCCCAAGGGACCTCAAATTCGTGATCTGAAGAGAGGTGTTGAAATCGTTATTGCTACACCTGGTCGCCTAATTGATATGTTGGAAGCTCAGCATACAAATCTGCGAAGGGTGACTTACCTTGTGTTGGATGAAGCTGATCGAATGCTTGACATGGGCTTTGAACCACAGATTAGAAAAATTATTGGGCAGATCCGACCTGATAGACAGACGTTGTACTGGAGTGCAACATGGCCAAGAGAGGTTGAAACTCTGGCAAGGCAGTTTCTACGCAACCCATACAAGGTAATTATTGGTTCACCAGATTTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTTTAACTGAAGTGGAGAAATATAATAGATTGATTAGATTGCTTAAAGAATTGATGGATGGGAGTCGAATTCTTATATTTATTGAGACAAAAAAGAGTTGCGATCAAGTTACAAGACAGTTGAGAATGGATGGATGGCCTGCACTTTCTATCCATGGTGATAAAAACCAGGCTGAAAGAGACTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATAAAATGTGTGATCAATTATGATTTCCCATCAAGCCTGGAAGACTACGTCCACAGAATTGGTCGAACAGGTCGTGCAGGGGCTAAAGGAACTGCCTTCACCTTTTTCACGCATGCAAACGCCAAGTTGGCCAGGGATTTGATCAAGATCTTGCAAGATGCTGGCCAGGTTGTGAGCCCTGCTTTATCTGCCTTGTCTCGGTCTGCTGGTTCCGGTCAATTTGGATCTGGGGGAAACTTCCGCTCCAGGGGACGGGGAGGTTATGGCAACCGAGGTCTCATATCAGGATCCAATACCATACCTCTGGGTTCAAGGAAGCTTTGGTAG 1851 0.4668 MNPYDNRYSDSSSYRNRRSDLIGSMPPSVPPMVGGASSSHGRGGHAPYGNNMGGLPPFMPPPGGFDIGRGGTSQRGFSGRLGNGHVGDRKDDLGRRGGGRDRGGGRFGGPHGDNKSSGRGRGFGGRGGGRRGGSSKDDLDNLALPKPVFRNLVPFEKNFYIESPSVRAMSEHDVMAYRASRDITVQGSDVPRPIRTFQDANFPDCCLDVIAKLGFVEPTPIQAQGWPMALKGRDLVGIAETGSGKTLAYLLPALVHISAQHPLVQGEGPIALVLAPTRELAVQIQEEALKFGTRANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSPDLKANQSINQVVEVLTEVEKYNRLIRLLKELMDGSRILIFIETKKSCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHANAKLARDLIKILQDAGQVVSPALSALSRSAGSGQFGSGGNFRSRGRGGYGNRGLISGSNTIPLGSRKLW 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0301 616 MobiDBLite consensus disorder prediction 1 141 - -
Mibi09g0301 616 CDD DEADc_DDX5_DDX17 207 401 - -
Mibi09g0301 616 Pfam Helicase conserved C-terminal domain 425 535 IPR001650 -
Mibi09g0301 616 FunFam probable ATP-dependent RNA helicase DDX17 157 404 - -
Mibi09g0301 616 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 429 574 IPR001650 -
Mibi09g0301 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 554 IPR027417 -
Mibi09g0301 616 MobiDBLite consensus disorder prediction 84 108 - -
Mibi09g0301 616 FunFam ATP-dependent RNA helicase RhlB 405 577 - -
Mibi09g0301 616 Gene3D - 403 576 IPR027417 -
Mibi09g0301 616 SMART ultradead3 214 417 IPR014001 -
Mibi09g0301 616 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 174 573 - -
Mibi09g0301 616 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 226 401 IPR014001 -
Mibi09g0301 616 SMART helicmild6 454 535 IPR001650 -
Mibi09g0301 616 MobiDBLite consensus disorder prediction 1 19 - -
Mibi09g0301 616 Pfam DEAD/DEAH box helicase 219 390 IPR011545 GO:0003676|GO:0005524
Mibi09g0301 616 Gene3D - 158 402 IPR027417 -
Mibi09g0301 616 CDD SF2_C_DEAD 414 544 - -
Mibi09g0301 616 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 347 355 IPR000629 -
Mibi09g0301 616 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 195 223 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0301 Mibi-ChrMibi09 3686227 3689932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0301 183 555 Eukaryotic Initiation Factors Gene Family AT3G19760 35.657 1.67e-71 234