Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0283 ATGGCGGAATCAGCCTCATCCATCCCTCACCAGACTTCTCCCTCCTCCGATTCAAAAAATACCAACAGGGACTATTCCACTGCAATCTTAGAACGGAAGAAGGCTCCTAACCGTCTTGTTGTTGATGAGGCTATTAATGATGACAATTCTGTGGTAACGATGCATCCTTCTACCATGGAGACGCTTCAGTTTTTCCGAGGGGACACTGTTCAGATTAAGGGAAAGAAGAGAAGGGACACAGTTTGCATTGTTCTTGCTGATGAGCAATGTGAAGAATCAAAAGTTAGGATGAATAGAGTTGTACGGGCTAATCTTAGAGTGCGGCTTGGAGACGTGGTATCTGTCCATCAATGTGGTGATGTGAAATATGGGAAGCGGGTTCACATTCTTCCACTTGATGATACTATAGAGGGTGTTACTGGCAACCTGTTTGATGCATATCTCAAGCCATACTTTCTGGAAGCCTATCGACCTGCAAGAAAAGGTGATCTGTTTCTTGTAAGGGGCGGGATGCGAAGTGTTGAATTCAAAGTAATAGAGACAGATCCTGGTGAATACTGTATTGTGGCACCAGACACTGAAATCTTTTGTGAAGGAGAACCCATCAAACGTGAAGATGAAGAGAGGTTGAATGAAGTTGGCTATGATGATGTAGGTGGTGTAAGAAAGCAAATGGCTCAAATCCGTGAGTTAGTTGAGCTTCCTCTTAGACACCCACAGCTCTTCAAATCCATTGGTGTTAAGCCTCCAAAAGGAATCTTGCTTTATGGACCACCTGGTTCTGGAAAGACTCTGATTGCTAGAGCAGTAGCTAACGAAACAGGCGCATTCTTCTTCTTAATTAATGGACCAGAAATAATGTCAAAGCTGGCTGGTGAGAGTGAGAGCAACTTGAGGAAGGCATTTGAGGAAGCTGAGAAGAATTCCCCCTCTATAATTTTCATTGATGAATTAGATTCAATTGCTCCGAAGAGAGAAAAGACACATGGGGAAGTGGAGAGGAGAATTGTCTCACAACTTTTGACTCTAATGGATGGCCTTAAGACCTGGTCACATGTTATTGTTATAGGAGCCACCAATAGACCCAATAGCATCGATCCTGCCTTGAGGAGATTTGGGAGATTTGATCGGGAGATTGACATTGGTGTACCAGATGAAGTTGGAAGATTGGAGATTCTTAGGATTCACACTAAAAATATGAAACTTGCAGATGGCGTTGATCTTGAAAGAGTTGCTAGAGATACCCATGGATATGTTGGTTCAGATGTTGCTGCTCTTTGCACAGAGGCTGCACTACAGTGTATTCGGGAGAAAATGGATATCATTGACCTAGAGGATGAAACAATTGATGCTGAGGTGTTGAATTCCATGGCTGTGACAAATGATCACTTCCAAACTGCTTTAGGTGCTTCAAATCCATCAGCTTTGCGTGAAACAGTTGTGGAGGTTCCCAATGTTTCCTGGGACGATATTGGGGGCCTGGAGAACGTTAAAAGGGAGCTTCAAGAGACTGTTCAATATCCAGTGGAGCATCCTGAAAAGTTTGAGAAATTTGGCATGTCACCTTCGAAAGGTGTTCTCTTCTATGGACCTCCTGGATGTGGTAAAACCCTTCTTGCAAAAGCAATTGCTAACGAATGCCAAGCCAACTTTATAAGTGTAAAAGGACCTGAGCTGCTAACAATGTGGTTTGGCGAAAGTGAGGCAAATGTACGTGAAATATTTGACAAAGCTCGGCAATCAGCTCCATGTGTTCTTTTCTTTGATGAACTAGACTCTATTGCAACCCAGCGTGGCAGTTCCACAGGAGATGCTGGAGGTGCTGCAGATAGGGTTTTGAACCAACTATTAACAGAAATGGATGGAATGTCAGCTAAGAAAACAGTTTTCATAATTGGGGCAACAAACAGGCCTGACATTATAGACCCTGCATTGCTCAGGCCCGGACGTCTGGACCAACTGATATATATCCCATTGCCAGATGAGAATTCACGCCTTCAAATCTTTAAAGCATGTTTGAGGAAGTCACCACTCTCTAAGGATGTTGACCTCACAGCACTTGCCCGTTTTACTCATGGATTCAGCGGTGCAGACATTACAGAAATTTGTCAGAGAGCCTGCAAATATGCTATCAGAGAAGATATTGAGAAGGGTATTGAGGAGGAGAGGAGAAAGAGAGAGAACCCTGAAGCTATGGAAGAGGATGAGGATCACATTGATGAGGTCGCCGAGATAAAGCCAGCACATTTCGAGGAGTCCATGAAGTTTGCTCGCAGAAGTGTCAGTGATGCTGATATCCGGAAGTATCAACTCTTTGCTCAGACATTGCAGCAGTCTCGTGGATTTGGATCGGAATTTCGATTTGCTGATCGAACCGATAACACTTCAACTGGAGCTCCAGACCCTTTTGCTTCTGCTGCTGCGGGAGACGATGATGATCTATACAGTTAA 2451 0.4394 MAESASSIPHQTSPSSDSKNTNRDYSTAILERKKAPNRLVVDEAINDDNSVVTMHPSTMETLQFFRGDTVQIKGKKRRDTVCIVLADEQCEESKVRMNRVVRANLRVRLGDVVSVHQCGDVKYGKRVHILPLDDTIEGVTGNLFDAYLKPYFLEAYRPARKGDLFLVRGGMRSVEFKVIETDPGEYCIVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTWSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLADGVDLERVARDTHGYVGSDVAALCTEAALQCIREKMDIIDLEDETIDAEVLNSMAVTNDHFQTALGASNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDENSRLQIFKACLRKSPLSKDVDLTALARFTHGFSGADITEICQRACKYAIREDIEKGIEEERRKRENPEAMEEDEDHIDEVAEIKPAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFADRTDNTSTGAPDPFASAAAGDDDDLYS 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0283 816 ProSitePatterns AAA-protein family signature. 629 647 IPR003960 GO:0005524|GO:0016887
Mibi09g0283 816 Pfam Cell division protein 48 (CDC48), domain 2 140 203 IPR004201 -
Mibi09g0283 816 FunFam Transitional endoplasmic reticulum ATPase 476 659 - -
Mibi09g0283 816 FunFam Cell division control 48 384 475 - -
Mibi09g0283 816 PANTHER AAA-FAMILY ATPASE 412 779 - -
Mibi09g0283 816 SMART AAA_5 522 661 IPR003593 -
Mibi09g0283 816 SMART AAA_5 249 385 IPR003593 -
Mibi09g0283 816 Pfam Cell division protein 48 (CDC48), N-terminal domain 38 118 IPR003338 -
Mibi09g0283 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 774 IPR027417 -
Mibi09g0283 816 SUPERFAMILY Cdc48 domain 2-like 120 212 IPR029067 -
Mibi09g0283 816 Gene3D - 663 773 - -
Mibi09g0283 816 Gene3D - 218 382 IPR027417 -
Mibi09g0283 816 Gene3D - 15 120 - -
Mibi09g0283 816 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524|GO:0016887
Mibi09g0283 816 SUPERFAMILY ADC-like 35 118 IPR009010 -
Mibi09g0283 816 Gene3D - 384 475 - -
Mibi09g0283 816 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 39 777 IPR005938 GO:0016787
Mibi09g0283 816 MobiDBLite consensus disorder prediction 783 816 - -
Mibi09g0283 816 MobiDBLite consensus disorder prediction 1 23 - -
Mibi09g0283 816 FunFam Cell division control 48 121 217 - -
Mibi09g0283 816 FunFam Transitional endoplasmic reticulum ATPase 15 120 - -
Mibi09g0283 816 Pfam AAA+ lid domain 406 447 IPR041569 -
Mibi09g0283 816 Pfam AAA+ lid domain 681 722 IPR041569 -
Mibi09g0283 816 Pfam ATPase family associated with various cellular activities (AAA) 253 382 IPR003959 GO:0005524|GO:0016887
Mibi09g0283 816 Pfam ATPase family associated with various cellular activities (AAA) 526 659 IPR003959 GO:0005524|GO:0016887
Mibi09g0283 816 Gene3D - 121 217 - -
Mibi09g0283 816 CDD AAA 492 659 - -
Mibi09g0283 816 CDD AAA 219 382 - -
Mibi09g0283 816 FunFam Transitional endoplasmic reticulum ATPase 214 382 - -
Mibi09g0283 816 SMART CDC48_2_2 138 204 IPR004201 -
Mibi09g0283 816 Gene3D - 476 659 IPR027417 -
Mibi09g0283 816 SMART CDC48_N_2 38 121 IPR003338 -
Mibi09g0283 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 474 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0283 Mibi-ChrMibi09 3389175 3393400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0283 518 717 Calmodulin-binding Proteins AT3G56690 42.647 1.95e-40 159