Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0246 ATGACTCGTTACTCCAATCATGAACATCGTCGTCTTCTATCTTCTCCTGCTGTATTCCCTTGTCAAGATATCTCTCCCTCCACTCTCCTCACTTCCTTAATCTCACTCTCCATCAATATCTGTAACTTCCAATCCAGATCCTTCCCCACACAACGACGTAATGCCAAAGAAGTCATACGTCAGGTTGGTATCATCCTTATATTTCTCCAAGAACTTACAGAAATCCCACAACAATGTCCTATTCTCTGTTTCTCCGAGCTTCACTACAGTTTCCAGAAGATTCTGTTCTTGCTTCAAGATTGTACTTGTGATGGTTCCAGATTATGGATGCTAATCAAATCCCAATACGTCGCCTCACAATTCAAAGTTCTAATTAGTGGGGTTTCTACTGCTCTTGATGTATTGCCTTTGCATCAGATTGAGGTTTGTGATGAGGTTAAAGAATTGGTGAAACTCGTGGCCAATCAAGCGAGGAAAGTGAAGTTTGAAGTTGATCCTGGAGATAATGAGAATTCAAAACTAGTCCGTTCGATTCTGCGTCAGTTTGAGAAGGGGATTGAACCTGAATTGGCTGATATGGATCGAGTTTTGGATTACTTAAAGATCAAGACATGGACTGATTGTAACAATGAGATTGAGTTCTTACATGACGAATTGCAATTTCAGTCCTCTGAATGTGAAGAACGTGAGGCTCCTCTTTTAAGTGGTCTGATCGGATTCCTAAGCTATTGCAGGGGAGTCATATTCAAAATAGAAACTCATGATCATGATGATGGTGATGATGATTCTTCAAATCCCAGGTGTAGTACGGAGTTGATTAATTGGATAAACCCAGAGGATTTCAGATGCCCAATTTCACTTGAGCTAATGACAGATCCAGTGACTGTATCAACAGGTCAAACCTACGAACGAGCTTCGATTCAACAATGGTTGAAATCTGGAAACAGAACATGTCCAAAAACAGGTGCGAAGCTGAAGAACACAGAGCTAATCCCAAACACGACATTAAGAAAGCTTATACAACAATTCTGCGTTGACCGTGGCGTCTCGTTGACCAAACTAAACAATCAAACTCATGACATAGCGAAAACAATTGTGCCAGGAAGTCCTGCGGCGGCGCATTCCATGCAATTTCTCTCATGGTTTCTTGCTCGCAGGCTTGTTTTTGGAACAATGGAGGAAAAAAACAAAGCAGCCTACGAGGTTCGTTTGTTGGCAAGGTCAAACCTTTTCAATCGGTCATGTTTAATCCAAGTGGGGATAGTGTCACCTCTTCTCGATCTTGTTTCATCAACGAGAGATAAATCCACACAGGAAAACGCCACAGCTGCATTGTTGAAGCTTTCAAAGCATAACAAAGGGAAAGAAGCTATCATTGAAAACCGAGGATTAAACCCCATTGTTATGGTCATCAAGAAAGGGTTAAGCCAAGAATCACGCCAAATCGCAGCCGCCATAATATTCTACCTCGTTTCTGTAAAACAATACAGAAAAATGGTAGGAGAACACCCAGAGGTAATTCCTTCTTTAGTTCAACTCATGAAGGAAGGAACAGCATGTGGGAAGAAGCATGCCATGGTTGCAATCTTTGGTCTTCTATGGCATACAAGTAATCATAAAAGAGTACTTGAAGCCAACACAGTTCAAGTTCTTGTTGATATGCTAGCTTCTTCGGAGAGAGAGGATGTGATGACAGATTCTTTGGCAGTTCTTGCGGCTTTAGCAGAGAATAAGGAAGGAGCAGAGGAAATGGTGAAAATGCCGGCGGTGGATTTGATAACTGGGATACTGAGATCATCAACGAGGAGGAATAATGGAGGGAAAGAGCATTGTGTTTCGATTCTGCTATCACTGTGTGTGAATGGAGGAGAAGAAGTTATTGGTGTAATGGCGAAAGATGCTTCCATAATGGCTTCCTTGTATTCGATTCTAACGGAGGGGACAAGTCGTGCGGCAAAGAAGGCTCGTTTTCTCATTAGGATTTTGCAGGATTTTAAGGAAAAACCAGATTCTTCGGCTGCAGAACAGCAACAAACCTATGACGTTATTGATTTATTAGGTTTGAGTTGA 2070 0.4174 MTRYSNHEHRRLLSSPAVFPCQDISPSTLLTSLISLSINICNFQSRSFPTQRRNAKEVIRQVGIILIFLQELTEIPQQCPILCFSELHYSFQKILFLLQDCTCDGSRLWMLIKSQYVASQFKVLISGVSTALDVLPLHQIEVCDEVKELVKLVANQARKVKFEVDPGDNENSKLVRSILRQFEKGIEPELADMDRVLDYLKIKTWTDCNNEIEFLHDELQFQSSECEEREAPLLSGLIGFLSYCRGVIFKIETHDHDDGDDDSSNPRCSTELINWINPEDFRCPISLELMTDPVTVSTGQTYERASIQQWLKSGNRTCPKTGAKLKNTELIPNTTLRKLIQQFCVDRGVSLTKLNNQTHDIAKTIVPGSPAAAHSMQFLSWFLARRLVFGTMEEKNKAAYEVRLLARSNLFNRSCLIQVGIVSPLLDLVSSTRDKSTQENATAALLKLSKHNKGKEAIIENRGLNPIVMVIKKGLSQESRQIAAAIIFYLVSVKQYRKMVGEHPEVIPSLVQLMKEGTACGKKHAMVAIFGLLWHTSNHKRVLEANTVQVLVDMLASSEREDVMTDSLAVLAALAENKEGAEEMVKMPAVDLITGILRSSTRRNNGGKEHCVSILLSLCVNGGEEVIGVMAKDASIMASLYSILTEGTSRAAKKARFLIRILQDFKEKPDSSAAEQQQTYDVIDLLGLS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0246 689 Gene3D - 390 673 IPR011989 -
Mibi09g0246 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 350 IPR013083 -
Mibi09g0246 689 SMART arm_5 535 576 IPR000225 GO:0005515
Mibi09g0246 689 SMART arm_5 408 450 IPR000225 GO:0005515
Mibi09g0246 689 SMART arm_5 577 620 IPR000225 GO:0005515
Mibi09g0246 689 SMART arm_5 451 492 IPR000225 GO:0005515
Mibi09g0246 689 FunFam RING-type E3 ubiquitin transferase 277 349 - -
Mibi09g0246 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 420 463 IPR000225 GO:0005515
Mibi09g0246 689 PANTHER U BOX DOMAIN-CONTAINING 76 662 - -
Mibi09g0246 689 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Mibi09g0246 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 546 589 IPR000225 GO:0005515
Mibi09g0246 689 CDD RING-Ubox_PUB 281 322 IPR045210 -
Mibi09g0246 689 FunFam RING-type E3 ubiquitin transferase 357 673 - -
Mibi09g0246 689 Pfam Armadillo/beta-catenin-like repeat 412 449 IPR000225 GO:0005515
Mibi09g0246 689 SUPERFAMILY RING/U-box 278 351 - -
Mibi09g0246 689 Pfam U-box domain 278 344 IPR003613 GO:0004842|GO:0016567
Mibi09g0246 689 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Mibi09g0246 689 SUPERFAMILY ARM repeat 393 662 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0246 Mibi-ChrMibi09 3010767 3012836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0246 10 678 U-box Gene Family AT1G10560 37.645 1.54e-155 464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0246 09 3010767 3012836 Mibi09g0246 09 3010767 3012836 ECH