Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0237 ATGGATGATAATAGCTTTAAGTACTCATCCTCTGAATCGCCTCTCTCTTCATTCCAAGCTCCTTATTACGTTGCTATAAATGAGAAAGAAGAACCAACTCCTTCATCAACAGTAAGCAAAATCAGCCCACTTATTCTATTAGTAATAATTGTTCTAGCTATCATCTTCTTCGTCTACGGGATCATTCATTTGGTTCTTTGGCTTATAATGAGAACTCCATCATCCTCTTCACCTCTATATAATTCCAATAGATTTCCAGAATCCACACACTCTCGTGCTTTTCAAAGGCAGCTCCATCATCTCTTCCGCTTACATGATTCAGGATTACAACAGTCTCTCATAGATGCTCTTCCCGTTTTTTACTACGAGGATGTTTTGGGTTTGAAAGAACCAGTTGATTGTGCTGTGTGTCTCTGTGAATTCTCGGAACAGGACAAGCTGAGGTTGTTGCCAATGTGTGGCCATGCTTTTCACATCACTTGTCTAGACACGTGGCTCCTCTCAAATTCCACATGCCCTCTTTGCAGAGCAACAATCTCATCAAGTTCAAATTTTTCCATGGAAAATCCAATGTTCAATGATGACAATTCTTGGGTTATTAACAGATACAAAGGAGGTGAAGAAAATGTCCATGTGTGTTCGGATACTGAGGGAGTACTAGGTAATGAAGGTCGAATTACAGAAAAAAGGGTTTTTTCTGTGAGGCTTGGGAAGTTTAGAAACTTTGATGGAGGAAGAGGTGTAGGAGGAGGAGAAGGTAGTAGTAGAAGTTGTAATATGGATGGAAGGAGATGCTTCTCAATGGGATCCTATCAGTATGTGGTGAGTGGTTCAAATCTGCAAGTGGTTCTTTCTGATGTTTCAGACAATGAGGAGGCTGTGGAGGGGAAGAAGATAGGAGATAGAATTAGAGGTGACAGCTTCTCTGTATCGAAGATATGGCTCTGGTCTAACAAGAGCAAGTTTCGAAGTTCTTCAGATGATGCTGCTTTCCCTTGGTTACTATGGGTGGCAATGGGAATACAGGTTATCAAGGTCACATCATCTGCTCCTCTTCTCCTTGACCTTGATGAGACCCCACACACAAGCAAACACCCAGAAAGTATCTTCCGGCACCGGAGAGTCATCCCTTTTGGTACTGAGATCGGACACTTCTCTCCACTGACAATGGGTTTGCAAAACAATCCCACAGTTCGAATATCCAACATTCCCCACACAGCAGTAGCCAAAGAACTCTTGGAATTTCTGGAGTCCATAACTGGTTCTGGCTCAGTCTTCGCCTTGGAAATCTTTACGGAGCGCCAGAATTGGAAATCTCGGGGCTTTGGCCGCGTCCAGTTCACTACACTCGAAGCTAAAGCCAAAGCTCAGTCACTTTCTCTACAAGATCGCCTTGTCTTCAAATCCCGCTACCTCAAAATCTCCGAGAGCTTCGAAGATATCATCTTTAGGCCCGCCAATCCAAGAAATAGGGTCGACAATGGGGTTTTGCATGCGGGTTTTATGGTTAAGGAGGATTGTATGAGTGTGCTGGAATCTTCGGAGGGTGTGAGAGGCTGGATCATGCCCGAGAGGGAGAGGGTTGAGTTTTGGGTGTGGCTGGGGAAAGAGTGTTACAAATTGGAGATAATGTTTCAGGATATTTTGGAGACAAATGGGTATTTTCTTGGGGAAGGAAAAGTGAATGCTCTACTTCTGAAGCTCAAATATGGGCCAAAGATCTATCAAAAGAAAACTGGGCCAAATGTTGCATCAAAATTTAAAGCTGATAGGTACCACTTTTGTCAGGAGGATTTTGAATTTGTTTGGGTACGGACAACAGACTTCTCGCCCATAAAGTCAATTGGACACTCTACAGCATTTTGTTGGGTCATTGAAGAAGAACCGTTTGCTGCAGATATTTTTCAAAGTTTCCCACTCTACAGAGAAAAATTAAACGATCTAATTCTGGAAGACGGGGAAGAATTTTGTTCCTCATCAGAAATAGTTCCATTGGTAAAGTGTGGTTCAGATTCAAAAATACCATATGAGGTTATTTTTCAGCTCAATTCTCTTGTTCACACACAGAAGATAAGCTTTGCTTCAGTGGATGATGATTTGATTGATTTGTTCAGCACCTTAAATGAAGAAACTTCTGCTATAATTCTTCAGAAGTTGCACAACCTAAAGTCCACATGTTATGAACCCCTAAAATATGTGAAGAGTCAATTACATGTGTTAAGGTGTAAAAAAAGAACCATTCCGCCATCATCGCACCAAAGGTTGACAGATAATAACGTCATGAGCTGCCATAGAGCCTTGATTACCCCATCAAAGATTTATTGTCTTGGTCCTGAGCTGGAAACCTCTAATTATGTGGTAAAGCATTTTGCATCATATGCTTCAGACTTCATTAGAGTCACTTTCGTTGAAGAGGATTGGAGTAAGCTTCCAACCGGTGCAGTTTCCACAAGCATTCAAAAGGGCATATTTTCAAAGTCTTCTGAAACTGAAATATATAAGCGGATATTGAATATTCTTCAAGATGGGATTGTAATTGGGGCTAAAAGATTTGAGTTTCTGGCCTATTCAGCTAGTCAACTCAGGTCAAGTTCTGTTTGGATGTTTGCTTCTAATGATAGTGTGACAGCAGATAATATTAGAGAATGGATGGGAATGTTCAAAGTGATACCCAGTGTCTCTAAATGTGCAGCAAGGATGGGTCAGTTGTTTAGTTCTTCCACGCAAACTCTTGAAGTTCCAGCGCGGGATGTGGAGTTGATTCCAGATATTGAAATCACCTCTGATGATGGTACAAATTATTGTTTCTCTGATGGTATTGGGAAAATTTCGCAATCTTTTGCCAAGCAAGTAGCAGAGAAATGTAAATTGGACCACGTTCCATCAGCCTTCCAAATTCGCTATGGTGGATACAAGGGCGTCATTGCTGTCGATAAGTATTCTTTCAGGAAGTTATCATTGCGCAAAAATATGCTGAAGTTTGAATCCCGAAGCACAATGCTCAATATCAATAAATGGAGTGAATCTATGCCTTGCTTTCTGAATCGAGAGATTATAACTCTGTTGTCCACCTTAGGAGTTGAAGATGAAGTATTTGAGGCATTGCAACAGGATCAGCTGTCTATATTAGCCGAAATGTTGAATAATAGAGTGGCAGCTTTGAATGTTTTGGAGAGTTTAAGTGGTGCTGATTCAAAAAACATTCTAGTGAAGATGCTGCATCAAGGTTATGAGCCAAACGTTGAACCTTACTTATTAATGATGCTTAGTGCTTATTATGAGCACCAGTTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCTAAAGGTCGGATTTTAATTGGTTGCTTGGATGAAACTGGGGTTTTAAATTATGGCCAAGTATATGTTCGCATAACCATGACAAAATCTGAGCTTGAATGTGGAGATGAAAGCTTAAGGAAAGTGGATGAGAGCACATGTTGTATAGTAGGCAAGGTGGTTGTCACAAAAAATCCTTGTCTACATCCAGGAGACATCAGAGTCCTTGATGCTGTCTATGATGTGCAATTTGAGGAGAACGGTCTGACAGATTGCCTTGTCTTCCCCCAAAAAGGGCCTAGGCCACATCCAAATGAATGCTCAGGTGGTGATCTTGATGGTGATTTATACTTCATTAGTTGGGATAAAGGCCTCATCCCATGCAAAATAGTGGCTCCAATGGACTGCTCAAGGAGGCCTCGTGTAATGGATCATGAGGTGACACTAAAGGAGATCCAACAATTTTTTGTTGATTACATGATCAATGATACTTTGGGTGCTATCTCTACAGCTCATCTGGTTCATGCAGACCGTGAACCTGAGAAGGCCATGAGTAAAAAATGTCTGGCATTGTCAGAGCTTCACTCCATGGCTGTTGACTTTGCAAAGACCGGAAATCCTGCAGAAATGCCAAGAGCCTTGAAACCAAGGGAGTTTCCTGATTTCATGGAGAGGGTAGGGAAACCAATGTATGTCTCGAAGGGGGCTCTGGGAAAACTATACCGAACCATAATTGAGTTGATCTTACAGCAAAGGTCCAACTCTGATTGGTCATCAGAGAAACTAGCAGAAGCATATGATCATGAACTGGAGGTGGATGGATTTGAGGACTTTCTGGAGGTTGCAAAATTTCATAGAGATCTGTATGCTGAGAAAATGAGATCTTTAATGAACTATTATGGGTCTGAGACTGAGGATGAGTTGTTGACTGGTAACATGCGAAGTCGTGCTTCGTATTTGCAGCGTGATAATAGGAGATATGGAGATATGAAGGATCGGATTCTGTTATCGGTGAAGAATTTGCAGCGTGAAGCTAAAAATTGGTTTGAAAGCAGTTGCCAACCACATGAAAAAATGCAAATGGCCTGTGCTTGGTATCATGTAACGTATCACCCTCCATATAACCTGGAGAGCTCTTGTTGTCTGAGTTTTCCGTGGATCTTAGGGGACATTTTACTGAATGTTAAGTCTAGGAAGGGGAAAAAACAGAGGTTGGACTCTGGTTGTTGA 4533 0.4147 MDDNSFKYSSSESPLSSFQAPYYVAINEKEEPTPSSTVSKISPLILLVIIVLAIIFFVYGIIHLVLWLIMRTPSSSSPLYNSNRFPESTHSRAFQRQLHHLFRLHDSGLQQSLIDALPVFYYEDVLGLKEPVDCAVCLCEFSEQDKLRLLPMCGHAFHITCLDTWLLSNSTCPLCRATISSSSNFSMENPMFNDDNSWVINRYKGGEENVHVCSDTEGVLGNEGRITEKRVFSVRLGKFRNFDGGRGVGGGEGSSRSCNMDGRRCFSMGSYQYVVSGSNLQVVLSDVSDNEEAVEGKKIGDRIRGDSFSVSKIWLWSNKSKFRSSSDDAAFPWLLWVAMGIQVIKVTSSAPLLLDLDETPHTSKHPESIFRHRRVIPFGTEIGHFSPLTMGLQNNPTVRISNIPHTAVAKELLEFLESITGSGSVFALEIFTERQNWKSRGFGRVQFTTLEAKAKAQSLSLQDRLVFKSRYLKISESFEDIIFRPANPRNRVDNGVLHAGFMVKEDCMSVLESSEGVRGWIMPERERVEFWVWLGKECYKLEIMFQDILETNGYFLGEGKVNALLLKLKYGPKIYQKKTGPNVASKFKADRYHFCQEDFEFVWVRTTDFSPIKSIGHSTAFCWVIEEEPFAADIFQSFPLYREKLNDLILEDGEEFCSSSEIVPLVKCGSDSKIPYEVIFQLNSLVHTQKISFASVDDDLIDLFSTLNEETSAIILQKLHNLKSTCYEPLKYVKSQLHVLRCKKRTIPPSSHQRLTDNNVMSCHRALITPSKIYCLGPELETSNYVVKHFASYASDFIRVTFVEEDWSKLPTGAVSTSIQKGIFSKSSETEIYKRILNILQDGIVIGAKRFEFLAYSASQLRSSSVWMFASNDSVTADNIREWMGMFKVIPSVSKCAARMGQLFSSSTQTLEVPARDVELIPDIEITSDDGTNYCFSDGIGKISQSFAKQVAEKCKLDHVPSAFQIRYGGYKGVIAVDKYSFRKLSLRKNMLKFESRSTMLNINKWSESMPCFLNREIITLLSTLGVEDEVFEALQQDQLSILAEMLNNRVAALNVLESLSGADSKNILVKMLHQGYEPNVEPYLLMMLSAYYEHQLSDLKSRCRIFVPKGRILIGCLDETGVLNYGQVYVRITMTKSELECGDESLRKVDESTCCIVGKVVVTKNPCLHPGDIRVLDAVYDVQFEENGLTDCLVFPQKGPRPHPNECSGGDLDGDLYFISWDKGLIPCKIVAPMDCSRRPRVMDHEVTLKEIQQFFVDYMINDTLGAISTAHLVHADREPEKAMSKKCLALSELHSMAVDFAKTGNPAEMPRALKPREFPDFMERVGKPMYVSKGALGKLYRTIIELILQQRSNSDWSSEKLAEAYDHELEVDGFEDFLEVAKFHRDLYAEKMRSLMNYYGSETEDELLTGNMRSRASYLQRDNRRYGDMKDRILLSVKNLQREAKNWFESSCQPHEKMQMACAWYHVTYHPPYNLESSCCLSFPWILGDILLNVKSRKGKKQRLDSGC 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0237 1510 SUPERFAMILY RING/U-box 113 182 - -
Mibi09g0237 1510 SMART FANCL_C_2 130 184 - -
Mibi09g0237 1510 PANTHER RNA-DEPENDENT RNA POLYMERASE 396 1501 IPR007855 GO:0003968
Mibi09g0237 1510 FunFam E3 ubiquitin-protein ligase ATL6 97 182 - -
Mibi09g0237 1510 CDD RING-H2_PA-TM-RING 133 176 - -
Mibi09g0237 1510 CDD RRM_SF 398 475 - -
Mibi09g0237 1510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 396 479 IPR000504 GO:0003723
Mibi09g0237 1510 Pfam RNA dependent RNA polymerase 768 1345 IPR007855 GO:0003968
Mibi09g0237 1510 SUPERFAMILY RNA-binding domain, RBD 396 718 IPR035979 GO:0003676
Mibi09g0237 1510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 185 IPR013083 -
Mibi09g0237 1510 SMART ring_2 134 175 IPR001841 -
Mibi09g0237 1510 Pfam Ring finger domain 133 176 IPR001841 -
Mibi09g0237 1510 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Mibi09g0237 1510 Gene3D - 392 482 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0237 Mibi-ChrMibi09 2937452 2946141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0237 39 326 C3H Transcription Factor Family AT2G18650 41.088 1.70e-48 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0237 09 2937452 2946141 Mibi09g0237 09 2937452 2946141 ECH