LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi09g0228	ATGAGCTCCAGCTCATTCTTGTTTAGTTTTGTCTCACCTCTTACCTGTAGGCCCACGTCACCAACCTGTACGCCTCCCTTCTCTTCTTCTCCCTCTTCCCTCTTGAGCTCTCAGCTCAGCTCATCTTCTTTTTGTTCCTTCAATTCTCCAAAGTTTGAACCTTTGGCTCTTGATTTTGATATGGCGACTTTTGCTGGCACTACCCAGAAATGCAAAGCCTGTGAGAAAACTGTGTATTTGGTGGATCAGCTTACTGCTGACAACAAGGTTTATCACAAGTCTTGCTTCAGATGCCACCATTGTAAAGGTACTCTTAAGCTGAGTAATTATAATTCCTTTGAGGGAGTTTTATACTGTAAGCCTCATTTTGATCAACTATTTAAGACGACCGGCAGCTTGGATAAAAGTTTTGAAGGTATTCCAAGAACTGTTAGAGTTGACAGATCGGGTGATCAGGTCCAAACCAACAGTAAAGTTTCAAGCTTATTTGGTGGAACTCGAGAAAAGTGTGTTGCTTGCAATAAAACCGTATACCCAATTGAAAAGGTGGCTGTTGATGGAAGTTCTTATCACAAGGCTTGTTTCAGGTGCACCCATGGAGGTTGTGTAATTAGTCCATCAAACTATGTGGCCCATGAACATCGCCTTTATTGTAGGCACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAGCTTGACATGCATGAGAATGGCAATGGGGTGACTGAAAACACATCAAGTGAGTGA	756	0.4286	MSSSSFLFSFVSPLTCRPTSPTCTPPFSSSPSSLLSSQLSSSSFCSFNSPKFEPLALDFDMATFAGTTQKCKACEKTVYLVDQLTADNKVYHKSCFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKTTGSLDKSFEGIPRTVRVDRSGDQVQTNSKVSSLFGGTREKCVACNKTVYPIEKVAVDGSSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDMHENGNGVTENTSSE	251

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi09g0228	251	ProSiteProfiles	LIM domain profile.	168	228	IPR001781	-
	Mibi09g0228	251	FunFam	LIM domain and actin-binding 1	65	135	-	-
	Mibi09g0228	251	ProSitePatterns	LIM zinc-binding domain signature.	71	105	IPR001781	-
	Mibi09g0228	251	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	163	195	-	-
	Mibi09g0228	251	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	196	234	-	-
	Mibi09g0228	251	SMART	lim_4	169	221	IPR001781	-
	Mibi09g0228	251	SMART	lim_4	70	122	IPR001781	-
	Mibi09g0228	251	CDD	LIM2_SF3	170	230	-	-
	Mibi09g0228	251	FunFam	LIM domain and actin-binding 1	164	234	-	-
	Mibi09g0228	251	Gene3D	Cysteine Rich Protein	65	135	-	-
	Mibi09g0228	251	Gene3D	Cysteine Rich Protein	165	234	-	-
	Mibi09g0228	251	PANTHER	OS06G0237300 PROTEIN	50	154	IPR045268	-
	Mibi09g0228	251	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	97	137	-	-
	Mibi09g0228	251	Pfam	LIM domain	170	225	IPR001781	-
	Mibi09g0228	251	Pfam	LIM domain	71	125	IPR001781	-
	Mibi09g0228	251	ProSiteProfiles	LIM domain profile.	69	129	IPR001781	-
	Mibi09g0228	251	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	63	96	-	-
	Mibi09g0228	251	CDD	LIM1_SF3	67	128	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi09g0228	Mibi-ChrMibi09	2837994	2840590	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Mibi09g0228		LIM	1.7e-10	CL0167

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mibi09g0228	09	2837994	2840590	Mibi13g0634	13	8283236	8285669	CCT
	Mibi09g0228	09	2837994	2840590	Mibi09g0228	09	2837994	2840590	ECH