Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0176 ATGCTCATGGCTTCTCTCACTAATAATCCTTCCAATTCCAATTTGGGTCTCTTGCTTCAAAATCAAGCCCCTCCTTCCTCTTCTTCTGACTCTCTCGATGCCTTTTTCCTCTCTGCCTCCTCCTCTTCCTTCCTCGGTTCAAGATCCATGGTGAGCTTTGAAGATGTTAAACGAGGGAAAGGATGTAACAGGTCATTCTTTAGCTCTTATGATCATGATGAAAATGGAGATGAAGACTTGGATGAATACTTTCATCAACCTGAGAAGAAGAGGCGGCTGACCGCTGACCAAGTTCAGTTTCTTGAGAAAAGCTTTGAGGTAGAGAACAAGCTTGAACCAGAGAGGAAAGTTCAACTAGCCAAGGAGGTTGGCTTGCAGCCTCGGCAAGTTGCCATTTGGTTCCAGAATCGCCGTGCACGATGGAAGACGAAACAGCTGGAGAAGGATTTTGATTCTCTTCAGGCTAGCTATGATAGTCTCAAAGCTGATTATGATAACCTCCTCAAGGAGAAAGATAAATTAAAAGCTGAGGTTGCAAATCTCACAGAGAAGGTTCTTCTTAGAGAGAAACAAGAGGGAAACTTCAAGCAGGATGATAAGAACAAGAGCAAAGTTAAAGAACCAGAACAAGAAGAGCAGAAGCCCCTGTTGGACACTTGTTCTGATGGGGAAGGCTCCAAAGTTTCTGTTGGTATATGTTCAGCCAAGAGTGACATATTTGATGCGGATAGTCCACATTACACTGATGGAGTTCACTCTGCGCTGTTTGAACCTGATCAGTCAGATCTATCTCAAGATGAAGAAGATAACTTGGGCAAGAACTTGTTTCCTCCTCCATACATATTTCCCAAGCTTGAAGACGTTGACTACTCTGACCCGTCTGAAAGTTCATGCAGTTTTGGATTCCCAGCTGAAGATCATGATGCCTTTTGGTCCTGGTCTTACTAG 948 0.4378 MLMASLTNNPSNSNLGLLLQNQAPPSSSSDSLDAFFLSASSSSFLGSRSMVSFEDVKRGKGCNRSFFSSYDHDENGDEDLDEYFHQPEKKRRLTADQVQFLEKSFEVENKLEPERKVQLAKEVGLQPRQVAIWFQNRRARWKTKQLEKDFDSLQASYDSLKADYDNLLKEKDKLKAEVANLTEKVLLREKQEGNFKQDDKNKSKVKEPEQEEQKPLLDTCSDGEGSKVSVGICSAKSDIFDADSPHYTDGVHSALFEPDQSDLSQDEEDNLGKNLFPPPYIFPKLEDVDYSDPSESSCSFGFPAEDHDAFWSWSY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0176 315 Pfam Homeobox associated leucine zipper 144 185 IPR003106 GO:0006355|GO:0043565
Mibi09g0176 315 Gene3D - 92 138 - -
Mibi09g0176 315 PRINTS Lambda-repressor HTH signature 115 124 IPR000047 GO:0003677
Mibi09g0176 315 PRINTS Lambda-repressor HTH signature 124 140 IPR000047 GO:0003677
Mibi09g0176 315 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Mibi09g0176 315 MobiDBLite consensus disorder prediction 192 218 - -
Mibi09g0176 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 65 210 IPR045224 GO:0003700
Mibi09g0176 315 FunFam Homeobox-leucine zipper protein HAT5 82 146 - -
Mibi09g0176 315 Pfam Homeodomain 89 142 IPR001356 GO:0003677
Mibi09g0176 315 SMART HOX_1 87 148 IPR001356 GO:0003677
Mibi09g0176 315 MobiDBLite consensus disorder prediction 192 226 - -
Mibi09g0176 315 Coils Coil 143 191 - -
Mibi09g0176 315 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Mibi09g0176 315 MobiDBLite consensus disorder prediction 250 276 - -
Mibi09g0176 315 CDD homeodomain 89 145 IPR001356 GO:0003677
Mibi09g0176 315 MobiDBLite consensus disorder prediction 1 31 - -
Mibi09g0176 315 SUPERFAMILY Homeodomain-like 68 146 IPR009057 -
Mibi09g0176 315 Gene3D - 139 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0176 Mibi-ChrMibi09 2292180 2293671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0176 46 313 Homeobox Transcription Factor Family AT3G01470 40.364 4.68e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi09g0176 Homeodomain 1.3e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0176 09 2292180 2293671 Mibi09g0176 09 2292180 2293671 ECH