LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi09g0159	ATGGCGGATTCTCCCAGAGGCTCTTCCAGCTTCTGGACACAAGCAAACGCTCTACTTCGCAAAAATCTCACTTTCCAGAAACGAAATGTGAAGTCAAATATACGGCTCATCTTATTCCCTTTTTTCGTCTGTGTGCTGCTTGTAGTTATACAAGCAGTGATTAATAGTGAGTTGGACAAGCCAAAGAACAAGTGTGGTTGCATTTGTACTAGGAGGGATGGCAATAATAAGTGTTTGGAGGAAGCATGTGGGATTCAATACTCAGACACAGATCAAGTTGCAACTTGTGCAATTCCGAATCCTCCAGAATGGCCTCCATTGTTACAAGTGCCTTCTCCTGAATACCGAGCCGTGCAAAACAACATCATTCCGTTCTCAGATTTGCCAAATGATTCTTGCAGGAGGACAGGATCGTGCCCTGTAACTTTTCTCTTCACTGGCAAAAATCAGTCTTTTGGAGAAACCTTGTTTGGGAATATGTTTAGAAGTACTTTTAGCGTGAATAACTCTGATGTCGTGGAAAGTTTGGCAAGAAATGTCCTGGGATCATCATCAATGCCACAAACGCAAAATTTTCTTGACCCAGCTTTCCTTTCGGATCTTCCCATTTATTATCTCCAAACTCAATGCACACAGAACTCTGCATTCTCTGTTCCAATCCAGATAGCAACCAATACCATCCAGCAAGAGCTTACATGTGCTCAAGGCTTACATTTATGGCGAAATAATTCTTCTGAGGTGAACAATGAGCTATTTAAAGGTTACCGAAAAGGGAACCCACAGAGACAGATCAATGAGATAGCTGCAGCCTATGATTTTCAAGATTCAGGCAAGAATAGCCTCAATGTCATCACATGGTACAACTCAACCTTTAAGAATGACACTGGTTTCCAAGAAATTGCATTGGCGCGAGTTCCCCGTTTAGTAAATATGGTATCGAATGCTTTCCTTCAGTTTTTGCGGGGTCCGGGTGCTGAGATGTTATTTGAGTTTGTAAAAGAAATGCCAAAACCTGCCACCCCATTGAGAATTGACGTGGCTTCTCTTCTGGGTCCCCTCTTCTTTACTTGGGTCTTCCTGCAACTTTTCCCTGTAATTTTGACATCACTGGTATACGAGAAAGAAAAGAAACTCAGAATAATGATGAAGATGCACGGTCTTGGCGATGGGCCGTACTGGATGATATCCTATGGCTATTTTTTTGCCCTATCAGTGCTCTATGTGCTATGCTTTGTGATATTTGGCTCCCTCATAGGATTGAAATTCTTTACATTGAACGACTACAGCATCCAATTCGTTTTTTATTTCCTCTTTATAAACTTGCAAATATCATTGGCGTTTCTTGTGGCCACCATGTTTTCAAATGTTAAGACAGCTACAGTAATTGCATACATTGGTGTCTTTGCATCTGGGCTTTTAGGTGGCTATCTTTTCAGTTTTTTTGTTGAAGATACATCATTTCCAAGAGGGTGGGTAGTTGTTTTAGAGTTGTATCCTGGGTTTGCGCTATATCGAGGACTCTATGAGTTAGCAGCATATGCCTTCGAAGCAAATGCTACAGGAAATAATGGAATGCGATGGAGAAATCTGAACGATAGTGTGAATGGCATGAGAACAGTCTTAATTATCATGTTTATTGAGTGGTTGTTGGTGCTTCTTGTTGCTTATTACATTGATCAAGTAGTAGGAAGTGGCAAAAGTCTTCTTTTTTTCGTGAAAAGATTTCAGAAAAAGCCTTTGTCATCATCATTCCGTAAGCCTAGTATGCAAAGGCAGGGATCAAAAGTTTTTGTTCAGATGGAGAAACCTGATGTCATTCAAGAGAGGGAAAAGGTTGAGCAGCTGCTACTTGAACCAACTATGGATCAGGCAATTGTATGCGACAACCTGAAAAAGGTGTATCCAGGGAGGGATGGAAACCCAGAGAAATATGCAGTGAGAGGTTTATCTCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGCCCCAATGGTGCTGGGAAGACCTCATTTATCAGCATGATGATTGGTCTCACGAAGCCAACCTCTGGCTCAGCATTTGTTCAAGGTATGGACATAAGAACTCAAATGGATGAAATATATACTAGCATGGGAGTATGTCCACAGCACGACTTGCTGTGGGAAACTCTAACTGGAAGAGAACACCTCCTCTTCTATGGCAGACTTAAAAATCTTAGAGGCTCAGCCTTAACACAAGCTGTGGAAGAATCTCTGAAAAGTGTAAACCTTTTTCATGGAGGGGTTGCTGATAAAAAAGCTGGAAAGTACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCATTAATTGGAGATCCCAAGGTTGTTTATATGGATGAACCAAGTACTGGATTGGACCCTGCATCAAGAAACAATTTATGGAATGTCGTCAAGCGTGCAAAGCAGAACCGGGCAATCATTCTTACCACGCATTCCATGGAAGAAGCAGAGGTCTTGTGTGACAGAATAGGAATATTCGTAGATGGAAGCTGGCAGTGCATTGGAAATCCAAAAGAGCTAAAAGCAAGATATGGAGGAAGCTATGTGTTCACGATGACAACATCTGCAGAACATGAGAATGAAGTGGAGAACTTGGTGCACAAGCTGTCCCCAAATGCTAGCAAAACATACCATATCTCTGGAACTCAGAAATATGAGCTGCCAAAACAAGAGGTCAAAATAGCTGATGTCTTCCGAGCTATTGCCATTGCAAAGAGAAACTTCACTGTCTTTGCTTGGGGTTTAACAGACACCACAATGGAAGATGTCTTCATTAAGGTCTCGAGTGAGGCTCAGGCATTCAACTCTTTGTCATGA	2844	0.4188	MADSPRGSSSFWTQANALLRKNLTFQKRNVKSNIRLILFPFFVCVLLVVIQAVINSELDKPKNKCGCICTRRDGNNKCLEEACGIQYSDTDQVATCAIPNPPEWPPLLQVPSPEYRAVQNNIIPFSDLPNDSCRRTGSCPVTFLFTGKNQSFGETLFGNMFRSTFSVNNSDVVESLARNVLGSSSMPQTQNFLDPAFLSDLPIYYLQTQCTQNSAFSVPIQIATNTIQQELTCAQGLHLWRNNSSEVNNELFKGYRKGNPQRQINEIAAAYDFQDSGKNSLNVITWYNSTFKNDTGFQEIALARVPRLVNMVSNAFLQFLRGPGAEMLFEFVKEMPKPATPLRIDVASLLGPLFFTWVFLQLFPVILTSLVYEKEKKLRIMMKMHGLGDGPYWMISYGYFFALSVLYVLCFVIFGSLIGLKFFTLNDYSIQFVFYFLFINLQISLAFLVATMFSNVKTATVIAYIGVFASGLLGGYLFSFFVEDTSFPRGWVVVLELYPGFALYRGLYELAAYAFEANATGNNGMRWRNLNDSVNGMRTVLIIMFIEWLLVLLVAYYIDQVVGSGKSLLFFVKRFQKKPLSSSFRKPSMQRQGSKVFVQMEKPDVIQEREKVEQLLLEPTMDQAIVCDNLKKVYPGRDGNPEKYAVRGLSLALPQGECFGMLGPNGAGKTSFISMMIGLTKPTSGSAFVQGMDIRTQMDEIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLRGSALTQAVEESLKSVNLFHGGVADKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQNRAIILTTHSMEEAEVLCDRIGIFVDGSWQCIGNPKELKARYGGSYVFTMTTSAEHENEVENLVHKLSPNASKTYHISGTQKYELPKQEVKIADVFRAIAIAKRNFTVFAWGLTDTTMEDVFIKVSSEAQAFNSLS	947

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi09g0159	947	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	624	853	IPR027417	-
	Mibi09g0159	947	ProSitePatterns	ABC transporters family signature.	764	778	IPR017871	GO:0005524\|GO:0016887
	Mibi09g0159	947	CDD	ABC_subfamily_A	629	850	-	-
	Mibi09g0159	947	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	625	862	IPR003439	GO:0005524
	Mibi09g0159	947	PANTHER	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	580	941	IPR026082	GO:0016020\|GO:0055085\|GO:0140359
	Mibi09g0159	947	SMART	AAA_5	655	838	IPR003593	-
	Mibi09g0159	947	Pfam	ABC-2 family transporter protein	279	557	-	-
	Mibi09g0159	947	FunFam	ABC transporter A family member 7	614	890	-	-
	Mibi09g0159	947	Pfam	ABC transporter	647	791	IPR003439	GO:0005524
	Mibi09g0159	947	Gene3D	-	616	892	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi09g0159	Mibi-ChrMibi09	2065040	2072867	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi09g0159	629	873	Calmodulin-binding Proteins	AT2G36910	23.643	9.30e-14	73.9