LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi09g0156	ATGAATGATGCAGCAGGAGAATCGTCATATGATAACAAATCAGTCTGGACATTCTCACAGAGGCCCAACCATTTTCTCAAGAGGTTACCTTCGTCTTTTATTATGGGAAATTGCTTTCAACATCGTCAAAAGCCTCATGATTCTCTCCCATTTCACCATTTTTCCGGTTCTACACAAGTTTCTACTAGAACCAGCACCCATTCCTATGGACATTCGAGTCCAGTGAAAGGATACAGTGATAAAACCAAACCTCAGACACTCCCTACTCCAAGATTGGAAGGTGTCATGTTATCCTCCCTGCATCTGAAAGCCTTCACATTCAATGAGCTCAAGGATGTTACTAAAAACTTTTGTCCTGATCATCTTCTGGGAGAAGGTGGATTTGGTAAAGTCTACAAGGGGTGGGTTGATGAACACTCTTTTGAGCCTGCAATGCCTGGATCTGGAATGGCTGTAGCTGTAAAGAAGCTTAAATGTAATGGTTTTCAAGGACATAAAGAGTGGCTGTCTGAACTCAACTATCTTGGTCAACTTCATCATCCAAATCTTGTTAAACTTTTTGGATTCTGCCTCGATGGGGATAACCGGCTTCTGGTATACGAGTACATGCCTAAAGGCAGCTTGGAGGCTCATCTATTTCGCAGGGGTGCACAACCACTTCCTTGGGCAACAAGGATCAAAGTTGCTTTGGGTGCTGCTCGAGGCCTCGCCTTCCTCCATGACTCCGAACAACAAGTTATATACCGTGACTTCAAGGCTTCTAACATCTTATTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGTTTTGCCAAAGCAGGGCCAACTGGCGACCATACTCATGTTTCCACTCAAGTCCTTGGTACTCGTGGCTATGCTGCTCCTGAATATATTCTCACAGGTTGGTTGACTGCAAGGTGTGATGTTTATAGCTTTGGGGTTGTGTTATTGGAACTTCTCTCAGGACGGCGTGCCATTGATAGAACGAAATCAGGAGTTGAACAGAACCTGGTAGATTGGGCAAGACCTTATTTGGGTGATAGGAGGAAGTTATTCAGGATCATGGACACAAAGTTAGAAGGGCAGTATCCACGGAAGGCAGCTTATAAAGCTGCTATTCTTGCTGTACAATGCATAAGTGAGGCTAAAATCAGACCCCAAATGTCTGAAGTTCTGGCTTCTCTTGAAAATATTCAAAATGCCAGAACCTCATCTAGTTCATCAGAAATGAGCCCCTCCTTAAGCCCTGTGGCAGAGAGAGGTCATACAGAAACATCCTCTTTGAGACATAATCATCATCATTCAATAGAGAAAGGGTTCATCTCCACTCACTTAAGTGAGAGCACTGTAAGATCCCCTGTTAAACCTCCCAATGTACAGTATAATAATAAGATTGGATGCCCTCCTCTTCATGTGGATATCACTACATAG	1434	0.4331	MNDAAGESSYDNKSVWTFSQRPNHFLKRLPSSFIMGNCFQHRQKPHDSLPFHHFSGSTQVSTRTSTHSYGHSSPVKGYSDKTKPQTLPTPRLEGVMLSSLHLKAFTFNELKDVTKNFCPDHLLGEGGFGKVYKGWVDEHSFEPAMPGSGMAVAVKKLKCNGFQGHKEWLSELNYLGQLHHPNLVKLFGFCLDGDNRLLVYEYMPKGSLEAHLFRRGAQPLPWATRIKVALGAARGLAFLHDSEQQVIYRDFKASNILLDSEFNAKLSDFGFAKAGPTGDHTHVSTQVLGTRGYAAPEYILTGWLTARCDVYSFGVVLLELLSGRRAIDRTKSGVEQNLVDWARPYLGDRRKLFRIMDTKLEGQYPRKAAYKAAILAVQCISEAKIRPQMSEVLASLENIQNARTSSSSSEMSPSLSPVAERGHTETSSLRHNHHHSIEKGFISTHLSESTVRSPVKPPNVQYNNKIGCPPLHVDITT	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi09g0156	477	MobiDBLite	consensus disorder prediction	402	433	-	-
	Mibi09g0156	477	MobiDBLite	consensus disorder prediction	402	423	-	-
	Mibi09g0156	477	ProSitePatterns	Protein kinases ATP-binding region signature.	123	156	IPR017441	GO:0005524
	Mibi09g0156	477	ProSiteProfiles	Protein kinase domain profile.	117	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi09g0156	477	Gene3D	Phosphorylase Kinase; domain 1	91	202	-	-
	Mibi09g0156	477	Pfam	Protein tyrosine and serine/threonine kinase	121	391	IPR001245	GO:0004672\|GO:0006468
	Mibi09g0156	477	FunFam	Serine/threonine-protein kinase BIK1	85	202	-	-
	Mibi09g0156	477	MobiDBLite	consensus disorder prediction	52	85	-	-
	Mibi09g0156	477	FunFam	Serine/threonine-protein kinase PBS1	203	414	-	-
	Mibi09g0156	477	CDD	STKc_IRAK	123	399	-	-
	Mibi09g0156	477	Gene3D	Transferase(Phosphotransferase) domain 1	203	418	-	-
	Mibi09g0156	477	SUPERFAMILY	Protein kinase-like (PK-like)	89	396	IPR011009	-
	Mibi09g0156	477	MobiDBLite	consensus disorder prediction	50	85	-	-
	Mibi09g0156	477	PANTHER	OS01G0588500 PROTEIN-RELATED	73	400	-	-
	Mibi09g0156	477	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	246	258	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi09g0156	Mibi-ChrMibi09	2036072	2039469	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi09g0156	63	396	Glycoside Hydrolase	AT3G07070	50.000	2.88e-106	320

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Mibi09g0156		PK_Tyr_Ser-Thr	4.8e-43	CL0016