Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0149 ATGGTTCACGTTTCATTTTACCGCAATTATGGGAAGACCTTCAAGAAGCCGCGCCGTCCGTACGAGAAGGAGCGTTTGGATGCTGAGCTGAAGCTAGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAGCTATGGAGGGTTCAGTATGCTCTGAGCCGTATCCGTAACAACGCGAGGGAGCTTTTGACCCTTGATGAGAAGAACCCTCGTCGGATCTTTGAGGGTGAGGCTCTTCTGCGTAGGATGTTTCGTTATGGGCTTTTGGATGAGAGTCAGAACAAGCTCGATTATGTCTTGGCTTTGACTGTTGAGAACTTCCTTGAGCGTCGTCTTCAAACTCTTGTGTTCAAATCTGGGATGGCCAAGTCTATTCATCACGCTAGGGTCCTCATAAGGCAGAGGCATATCAGGCAGGTTGTGAACATCCCATCTTTCATGGTGCGGGTTGATTCCCAGAAGCATATTGACTTCTCACTTACAAGTCCATTTGGAGGTGGACGCCCTGGAAGAGTGAAGAGAAGGAACCAAAGGGCTGCTGCCAAGAAGGCTGCTGGCGGAGACGGTGATGAGGAGGATGAAGAGTAA 585 0.5026 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARELLTLDEKNPRRIFEGEALLRRMFRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQRAAAKKAAGGDGDEEDEE 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0149 194 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Mibi09g0149 194 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 180 IPR022801 GO:0003735|GO:0015935|GO:0019843
Mibi09g0149 194 FunFam 40s ribosomal protein s9 108 162 - -
Mibi09g0149 194 MobiDBLite consensus disorder prediction 161 194 - -
Mibi09g0149 194 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Mibi09g0149 194 CDD S4 109 150 - -
Mibi09g0149 194 Gene3D - 108 161 IPR036986 GO:0003723
Mibi09g0149 194 Pfam S4 domain 109 149 IPR002942 GO:0003723
Mibi09g0149 194 TIGRFAM uS4_arch: ribosomal protein uS4 11 163 IPR005710 GO:0003735|GO:0006412|GO:0015935
Mibi09g0149 194 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Mibi09g0149 194 SUPERFAMILY Alpha-L RNA-binding motif 12 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0149 Mibi-ChrMibi09 1947094 1948795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0149 1 184 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 91.444 1.69e-124 347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0149 09 1947094 1948795 Mibi09g0149 09 1947094 1948795 ECH