Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0102 ATGGCGGAGGGGGAATCTCCTACTGTGCTGAGTGTGGAGGGTCTTGACGACGTGGAGGACTACGTTTTGGCATCTGAACCGGAGGGTTTGACAAGGGAAACACACAGTCATGTTTTTGAACTCGTGCAGAATGGCAATGAGGCATTTCGGGAGAACCGTATGGAGGAGGCAATCGACTTTTACTCTAGAGCAAATAGCATCAAGACTGGTGATCCTGTTATACTCAGCAACCGAAGTGCAGCTTATATCAGGATTAGCCAATTTTTAAAACACAGGCCTCCATCAGCTTCAGAATATAGTCCCTTGAGTGGGCTTGATCCTACAACACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTCAACATCCAAAGTAGTTCAGTAAAGTCATACCTTTTAAAGGCCAATGCTTTTTTTTTGTTGGAGAAATATGAGATGGCTCGGGATGTTATTCTTTCAGGCCTTCAGGTCGATCCATATAGTAATTCCCTCCGGGTGTCTCTTTCAAATCTGGAAAGAGCATTGGCTAGCTTGGCAAGGATGAGTGCACATGGACAGCCAGAGCGCACTGATGACTTTGATTGTACAGTTTGCCTCAAGTTACTTTATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCAGTCATGTCTATTTCAGTCAATGGATCGTGGCAACAGGTGCCCATTGTGCAGGACGGTTCTGTTTATTAGTCCTAGAACGTGTTCCATCAGTGTGACATTGAAAAACATCATACAAAAGAATTTTCCGGAGGAATATGCTGAAAGGAAGCAAGAGAATGACAGTTTGACCAACTTGGGCTTAGATTTGATCCCTCTTTTTGTCATGGATGTTGTCATTCCATGTCAAAAGTTTCCGCTTCATATATTTGAACCTCGTTATAGACTGATGGTTAGAAGAATAATGGAAGGAAATCGTCGGATGGGAATGGTTATAATTGATCCTGCAACAGGTTCCCTAGCTGAGTTTGCCTGTGAAGTGGAAATTACTGAGTGTGAACCACTTCCAGATGGACGTTTCTATATAGAGATTGAAAGTCGTAGGAGATTTCACATCATCCGATCTTGGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATTCAGGATATTTTGCCATTGGAAGGTACAAGAGAGAGAGAAGATTTACAAGAAATAACAAATAATGCTGCAGAAAGTGCTCGATCGTGGATCAGAAGGGCTAAAGAAGCAGCAGGACAAGATCAAAGAAGACTTGAGAGACTGTTGAATGTTGAAGTGATGATGCCCCCGCTTCAAGACCCTGAGCGCTTCAGTTTTTGGCTTGCTACCTTATCAAACCGGAGGCCTGCGGATAAATTGGATCTTCTGCGCTTGAGAGATACCAAAGAGAGGATCAGGCGTGGTTTGATATTTTTGCGAGCCGAGGAACAAGGCTGCAGAATCCAATGA 1461 0.4374 MAEGESPTVLSVEGLDDVEDYVLASEPEGLTRETHSHVFELVQNGNEAFRENRMEEAIDFYSRANSIKTGDPVILSNRSAAYIRISQFLKHRPPSASEYSPLSGLDPTTHAELGLKDAEKLVNIQSSSVKSYLLKANAFFLLEKYEMARDVILSGLQVDPYSNSLRVSLSNLERALASLARMSAHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCQSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQENDSLTNLGLDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNRRMGMVIIDPATGSLAEFACEVEITECEPLPDGRFYIEIESRRRFHIIRSWDQDGYRVAEVEWIQDILPLEGTREREDLQEITNNAAESARSWIRRAKEAAGQDQRRLERLLNVEVMMPPLQDPERFSFWLATLSNRRPADKLDLLRLRDTKERIRRGLIFLRAEEQGCRIQ 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0102 486 Gene3D - 278 380 IPR046336 -
Mibi09g0102 486 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Mibi09g0102 486 Pfam ATP-dependent protease La (LON) substrate-binding domain 280 476 IPR003111 -
Mibi09g0102 486 SUPERFAMILY TPR-like 37 176 IPR011990 GO:0005515
Mibi09g0102 486 ProSiteProfiles Zinc finger RING-type profile. 196 234 IPR001841 -
Mibi09g0102 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 275 IPR013083 -
Mibi09g0102 486 Pfam Zinc finger, C3HC4 type (RING finger) 196 233 - -
Mibi09g0102 486 Gene3D Tetratricopeptide repeat domain 37 175 IPR011990 GO:0005515
Mibi09g0102 486 SUPERFAMILY RING/U-box 190 259 - -
Mibi09g0102 486 ProSiteProfiles Lon N-terminal domain profile. 277 478 IPR003111 -
Mibi09g0102 486 PANTHER RING FINGER PROTEIN 127 20 478 - -
Mibi09g0102 486 SMART ring_2 196 233 IPR001841 -
Mibi09g0102 486 SMART lon_5 279 478 IPR003111 -
Mibi09g0102 486 SUPERFAMILY PUA domain-like 280 476 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0102 Mibi-ChrMibi09 1531889 1539818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0102 187 237 C3H Transcription Factor Family AT1G74990 35.185 1.80e-09 54.3