Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0056 ATGCAGCTCCAAGAGCTTCTACAAGTAGATGGATATTACCTTGCATTACACGTAGCCCTGAACAATCAACAAATACCAGGGCTGAGGCTAGTAGTTCAGCTCCAAGAGCTTCTACTAGTAGATGGAGAGTACCTTGCATTACATATTGTTGCCCAGAACAATCAACAAATACTAGGGCTGAGGCTAGTAGTTCAGCTCCAACAGCTTCTAACGGAAGATGGAGATTACCTTGCTTTTCACGTTGGAAATTCCGTCGTTAGAGACAGGTTATATATGTTCCAGGCCAAGAATCCCAGAAAGACACAGCCAGAGAAAATGTCAAAGTCAGTCACTCCGGATGCGATTTCCATCTTGTTTGCGAATCCTTCCCCTGATTCTTCATCGGAGCTTCCCCACATCATCGTCCAAGTCCTCGATCTCAAGCAAAGCGGTAACAGATACATGTTTACTGCAAGCGATGGGAGATTGAAATTAAGAGCGATTCTACCCTCAAGTCAGAATTCTCAGGTCCTTTCAGAAAATATTCAAAACCTGGGGCTTATTCGAATCGTTGACTATACTCTCAACGACATCCCAAATAAGTCAGAGAAGTATCTTATTGTGACAAAATGTGAACCAGTCTCCCCTGCACTCGAAAGGGAAATAAAGCATGAGGTGAAGAGTGAGGAAACCGGCATTATTTTGGAACAAGAACGAGAGGATGAAACGAAAAGTCAGGTGAAAACTGAAGGAGCAGGCCTTCTTTTGAAACCGAAGCAAGAAATCGTGTCTAAATCTGCTGCTCAGATCGTACATGAACAGCACGGAAATATGGTCCCAGCTGCTCGAATGGCCATGACTCGCAGGGTGCGTCCTCTGGTTTCCTTAAACCCTTATCAGGGTAACTGGACGATCAAAGTTCGGGTTACAAACAAAGGAATCATGCGAACCTATAAGAATGCAAGAGGGGAAGGCTGTGTCTTCAACGTGGAACTGACAGATGAAGATGGAACTCAAATTCAAGCGACAATGTTCAATGAAGCCGCAAGGAAATTTTATGAAAAATTTGTGTTGGGGAAGGTTTACTACATTTCAAAGGGTACTTTAAAAGTCGCCAACAAGCAGTTCAAAACTGTTCAAAATGATTATGAAATGACACTAAATGAGAACTCTGAAGTGGAAGAGGCAACCAGTGAAGAAAGCTTTGTTCCAGAAACAAGGTTCAAGTTTGTCCCGATTGATCAGCTGGGCCCGTATGTAAACAGAAATGAACTTGTCGATGTCATTGGAATCGTTCGAAATGTGTCTCCTACATTGAGCATACGCAGGAAGAGCAGCAATGAAACTGTCCCAAAGCGTGATATTACTATTGCTGATGAGACAAAGAAAACAGTTATTGTGTCTTTGTGGAATGAGAATGCAACAAAAGTAGGGCAAGAATTATTGGACCTTGCTAATAATTCTCCTATAGTAGCAATCAAATCACTCAAGGTTGGGGACTTTCAAGGTGTTTCCTTGTCAACTATAAGTAAAAGCCTTGTGCTGGTAAATCCAGAGATACCTGAAGCTAAGAAGCTTAGACTCTGGTACGAATCTGAAGGAAATGATGTATCATGGGCATCCATAAGCTCTGGCATGAATTCGGAATCCATGAACGGAATGAGATCAGTTTATTCTGACCGAGTTTCACTTTCTCATATTACCTCAAACCCATCCTTAGGGATGGAAAAGCCTGCATTTTTCAGCATAAGGGCACATATAAGCTACATCAAGCCTGACCAAACAATGTGGTACAGAGCCTGTAAAACATGCAACAAGAAAGTCACTGAATCCATTGGCGCTGGGTATTGGTGCGAAGGCTGCCAGAAAAACTATGAAGAGTGCAGTTTAAGATACATTATGGTTGTAAGAGTTGCTGATAGAAGTGGAGAAGCCTTTGTCTCGGTCTTCAATGATGAAGCTGAGAAGATTGTTGGGTGCTCTGCTGAAGAACTTGATAACCTAAAGTCACAGGAGGGGGAAGATAATCCATATCAATTGAAACTGAAACAAGCAACATGGACTCCTTATCTTTTCCGGGTCAGCGTTTCTCAAAATGAGTATAATAATGAGAAAAGGCAAAGAATAACAGCCCGGGCAGTTGTTCCGATGGACTTTGCTAATGAGTCAAGATTTCTCTTGGAAGAGATATCAAAGATGAGAGCTTCTCAATAA 2193 0.4218 MQLQELLQVDGYYLALHVALNNQQIPGLRLVVQLQELLLVDGEYLALHIVAQNNQQILGLRLVVQLQQLLTEDGDYLAFHVGNSVVRDRLYMFQAKNPRKTQPEKMSKSVTPDAISILFANPSPDSSSELPHIIVQVLDLKQSGNRYMFTASDGRLKLRAILPSSQNSQVLSENIQNLGLIRIVDYTLNDIPNKSEKYLIVTKCEPVSPALEREIKHEVKSEETGIILEQEREDETKSQVKTEGAGLLLKPKQEIVSKSAAQIVHEQHGNMVPAARMAMTRRVRPLVSLNPYQGNWTIKVRVTNKGIMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEATSEESFVPETRFKFVPIDQLGPYVNRNELVDVIGIVRNVSPTLSIRRKSSNETVPKRDITIADETKKTVIVSLWNENATKVGQELLDLANNSPIVAIKSLKVGDFQGVSLSTISKSLVLVNPEIPEAKKLRLWYESEGNDVSWASISSGMNSESMNGMRSVYSDRVSLSHITSNPSLGMEKPAFFSIRAHISYIKPDQTMWYRACKTCNKKVTESIGAGYWCEGCQKNYEECSLRYIMVVRVADRSGEAFVSVFNDEAEKIVGCSAEELDNLKSQEGEDNPYQLKLKQATWTPYLFRVSVSQNEYNNEKRQRITARAVVPMDFANESRFLLEEISKMRASQ 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0056 730 Pfam OB-fold nucleic acid binding domain 296 382 IPR004365 GO:0003676
Mibi09g0056 730 Gene3D - 109 217 IPR012340 -
Mibi09g0056 730 Gene3D - 396 536 IPR012340 -
Mibi09g0056 730 SUPERFAMILY Nucleic acid-binding proteins 106 210 IPR012340 -
Mibi09g0056 730 FunFam Replication protein A subunit 395 534 - -
Mibi09g0056 730 Pfam Replication factor-A protein 1, N-terminal domain 110 207 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mibi09g0056 730 Pfam Replication factor-A C terminal domain 573 719 IPR013955 -
Mibi09g0056 730 CDD RPA1_DBD_A 285 388 - -
Mibi09g0056 730 FunFam Replication protein A subunit 539 726 - -
Mibi09g0056 730 SUPERFAMILY Nucleic acid-binding proteins 284 391 IPR012340 -
Mibi09g0056 730 FunFam Replication protein A subunit 282 392 - -
Mibi09g0056 730 SUPERFAMILY Nucleic acid-binding proteins 401 529 IPR012340 -
Mibi09g0056 730 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 108 725 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mibi09g0056 730 Gene3D - 537 726 IPR012340 -
Mibi09g0056 730 Gene3D - 282 391 IPR012340 -
Mibi09g0056 730 Pfam Replication protein A OB domain 413 509 IPR031657 -
Mibi09g0056 730 SUPERFAMILY Nucleic acid-binding proteins 552 726 IPR012340 -
Mibi09g0056 730 CDD RPA1_DBD_B 418 524 - -
Mibi09g0056 730 PANTHER REPLICATION FACTOR A 1, RFA1 296 689 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mibi09g0056 730 FunFam Replication protein A subunit 109 219 - -
Mibi09g0056 730 CDD RPA1_DBD_C 557 725 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0056 Mibi-ChrMibi09 961599 967645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0056 106 730 Core DNA Replication Machinery Family AT5G08020 66.933 0.0 906