Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi09g0047 | ATGGGCTCAGAAAGTGAAACAGCTCCTCTCTTAGAGCGCAAGGGAGGGGGAAAGAGCAAAAGTGCCTCATTGAATGAACTGACAGACCTTGAACGTGGTGATGCGGCAGCAAATGTGGGATTTGGCAGGGTGCTTTCACTTGCAAAGCCTGAAGCCGGGAAGCTGATATTTGCAACGCTGGCTCTTTTAATTGCATCCACATCAGATATTTTAATTCCAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGAGATACTCAAACTCCTGAAGATAAAGCTAAAGCTTTGGAAGCTGTCAAGAGCACCATACTGTACATTTTTCTGATTGTTGTTGTTGGATCAGTTTCAACAGCACTTGATGGTTGGCTTTTTTCCTCTGCTAGTGAAAGGGTTGTTGCCCGGCTTAGAAAAAACTTATTTAGTCGCCTCATAATCCAGGAGATAGCCTTCTTTGATGTTACCCGTACTGGGGAACTTATGAGTAGGCTATCTGAAGATACACAGATCATAAAAAATGCATCAACCACCAATCTTTCTCAAGCTCTGAGTGGCTTATCGACTGCATTTATTGGCCTTGGATTCATGTTTTTGACATCATGGAAGCTTACATTGTTGTCTTTAGCTGTTGTCCCTGCCACTTTTGTTGCTGCACAAAAATTTGGTTGGTTCCTACGCGAACTTTCTCAGAAAACTCAAGATGCAGCTGCAGCAGCTGCTTCAATAGCTGAGGAATCATTTGGTGCCATAAGGACGGTCAGATCTTTTGCCCAAGAGGAATATGAAATATCACGCTACTCTAAGAAAGTTGATGAGACACTTAGGCTTGGGCTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCATTTATACAGCAGTTTCACTGCCAATTATTCTAGTTGTTATCTATGGGGCTTATTTGACTACTACAGGTTCCATGTCCCCTGGTGATCTTACGTCTTTCATTCTTTACAGTCTCACAGTGGGACATTCTATATCTGGTCTCTCCGGATTGTATACCATAGCTATGAAAGCTGTGGGTTCAAGCAGACGGGTGTTTCACCTTCTTGATCTTGTATCATCAATGCCAATGTCAGGAAATGAATGTCCACTGGGAGAACAAGATGGGGAGGTGGAGCTAGATGATGTCTGGTTTGCATATCCATCTCGTCCTAGTCATATGGTACTTAAGGGAATTACAATGAAATTGCAGCCAGGTTCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGACCACAATAGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATCCTGCTGAATGGGGTTCCACTGGTAGAAGTATCACATAATCATCTGCACAAGAAGATCAGTATTGTGAGTCAGGAGCCTGTACTTTTCAACTGTTCAATTGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTAAATCCTGCTGATATAGAAAATGCAGCTAAAATGGCGAATGCACATGAATTCATATCAAAATTCACAGATAAATACCAGACCCATGTTGGGGAGCGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCGATTGCCAGAGCTTTGCTTATGGACCCAAAAATTCTTCTTCTGGATGAAGCCACTAGTGCCTTGGATGCTGAAAGCGAATATTTAGTGCAGGATGCTATGGAAAGTCTGATGAAGGGAAGGACAGTACTAGTTATAGCTCACCGGCTATCAACAGTAAAGAGTGCTGATAGAGTTGTGGTTATTTCTAATGGTGAAATTGCGGAGAGTGGGACCCATGAAGACCTTCTCACCAACAATGGTGTCTATTCGGCTTTAGTCAGCAGACAGCTCCAAAAAATGAAGCCTCAATATCTGGTGTCTTAA | 1890 | 0.4259 | MGSESETAPLLERKGGGKSKSASLNELTDLERGDAAANVGFGRVLSLAKPEAGKLIFATLALLIASTSDILIPKFGGKIIDIVSGDTQTPEDKAKALEAVKSTILYIFLIVVVGSVSTALDGWLFSSASERVVARLRKNLFSRLIIQEIAFFDVTRTGELMSRLSEDTQIIKNASTTNLSQALSGLSTAFIGLGFMFLTSWKLTLLSLAVVPATFVAAQKFGWFLRELSQKTQDAAAAAASIAEESFGAIRTVRSFAQEEYEISRYSKKVDETLRLGLKQAKVVGLFSGGIYTAVSLPIILVVIYGAYLTTTGSMSPGDLTSFILYSLTVGHSISGLSGLYTIAMKAVGSSRRVFHLLDLVSSMPMSGNECPLGEQDGEVELDDVWFAYPSRPSHMVLKGITMKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLVEVSHNHLHKKISIVSQEPVLFNCSIEENIAYGFDGKVNPADIENAAKMANAHEFISKFTDKYQTHVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKSADRVVVISNGEIAESGTHEDLLTNNGVYSALVSRQLQKMKPQYLVS | 629 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi09g0047 | 629 | SUPERFAMILY | ABC transporter transmembrane region | 43 | 359 | IPR036640 | GO:0005524|GO:0016020 | |
| Mibi09g0047 | 629 | Gene3D | ABC transporter type 1, transmembrane domain | 39 | 368 | IPR036640 | GO:0005524|GO:0016020 | |
| Mibi09g0047 | 629 | FunFam | ABC transporter B family member 25 | 107 | 377 | - | - | |
| Mibi09g0047 | 629 | CDD | ABC_6TM_AtABCB27_like | 58 | 354 | - | - | |
| Mibi09g0047 | 629 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Mibi09g0047 | 629 | FunFam | ABC transporter B family member 25 | 378 | 620 | - | - | |
| Mibi09g0047 | 629 | Pfam | ABC transporter | 398 | 548 | IPR003439 | GO:0005524 | |
| Mibi09g0047 | 629 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 56 | 346 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Mibi09g0047 | 629 | Pfam | ABC transporter transmembrane region | 55 | 329 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Mibi09g0047 | 629 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 380 | 617 | IPR003439 | GO:0005524 | |
| Mibi09g0047 | 629 | SMART | AAA_5 | 407 | 594 | IPR003593 | - | |
| Mibi09g0047 | 629 | PIRSF | ABC_prm/ATPase_B | 4 | 628 | - | - | |
| Mibi09g0047 | 629 | ProSitePatterns | ABC transporters family signature. | 520 | 534 | IPR017871 | GO:0005524|GO:0016887 | |
| Mibi09g0047 | 629 | PANTHER | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL | 31 | 622 | - | - | |
| Mibi09g0047 | 629 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 372 | 618 | IPR027417 | - | |
| Mibi09g0047 | 629 | CDD | ABC_MTABC3_MDL1_MDL2 | 380 | 618 | - | - | |
| Mibi09g0047 | 629 | Gene3D | - | 374 | 623 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi09g0047 | Mibi-ChrMibi09 | 849239 | 854418 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi09g0047 | 100 | 622 | Calmodulin-binding Proteins | AT2G36910 | 34.206 | 4.30e-86 | 291 |