Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0039 ATGGGGAGGGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTCACCTTCAGCAAGAGAAGGTCAGGCCTCGTCAAGAAGGCCAAGGAGATCTCTGTGCTTTGTGATGCAGAGGTTGCCCTTATGGTCTTCTCCACCAAAGGCAAGCTCTACCACTTCTCCAGCGACCCCTGTATGGAAAGAATCTTGGAACGGTACGAGAGGTATTCCTACGCGGAGAGACAGCTTGCTGCAAATGATCTGGAATCCAATTGTCAGGAAAACTGGACTTTACAGCACGCCAAGTTGAAGGCAAGAATAGAGGTCCTACAAAGAAATCAAAGGCATTTAATGGGAGAAGATCTGGAGGGGCTAAGTCTTAAAGAGCTGCAGAATTTGGAACATCAGCTGGAGTCAGCACTGAAACACATTAGAGCACGAACGAATCGCCTCATGAACGAATCTATTTCGGAACTTCAGAAAAGGGATAAGGCACTGCAGGAACAAAACAATGTAATAGCTAAGAAGATAAAGGAAAGGGAGAAGGCAGTGGAGCAGCAGAAGAATCAAGGGTTGGATGATTCCTCTGTTCTGTTAACACAACACCCTTTGCTTCCTTTGAATATCATCGGAGGATCAAGAGGAGAGGGCGTAGAATATGGAGGAAATCTGGATGAGGCTCGACCCAATAATACAATGCTTCCACCTTGGATGCTTCGCCCTCTCCATGAATAG 726 0.4683 MGRGRVELKRIENKINRQVTFSKRRSGLVKKAKEISVLCDAEVALMVFSTKGKLYHFSSDPCMERILERYERYSYAERQLAANDLESNCQENWTLQHAKLKARIEVLQRNQRHLMGEDLEGLSLKELQNLEHQLESALKHIRARTNRLMNESISELQKRDKALQEQNNVIAKKIKEREKAVEQQKNQGLDDSSVLLTQHPLLPLNIIGGSRGEGVEYGGNLDEARPNNTMLPPWMLRPLHE 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0039 241 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Mibi09g0039 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi09g0039 241 Pfam K-box region 86 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi09g0039 241 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Mibi09g0039 241 Coils Coil 90 117 - -
Mibi09g0039 241 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Mibi09g0039 241 Coils Coil 124 183 - -
Mibi09g0039 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi09g0039 241 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi09g0039 241 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Mibi09g0039 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi09g0039 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi09g0039 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi09g0039 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi09g0039 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Mibi09g0039 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0039 Mibi-ChrMibi09 732580 737288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0039 1 219 MADS-box Gene Family AT1G26310 59.735 1.77e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi09g0039 K-box 1.9e-26 No_clan