Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0026 ATGCCTTCCCAAATGGCAGATGTGACCTACCTTCGGCACCGCGAACGCGAAGCGGACGACGATTCTCACCTTGCTGTTCCAGATCACACCCTCTTTCTTGAGTCTGTCGATTTCGACTTCGACTTCGATTTCTATCGTTCTGATCCAGAATTCCCTCCCCCCGATTCCCCTCGTGGTGATCCCGGTTCCATTCCCTGCACCGATCTGCTGGACCGCGAAAACCAGGTGAATTTCGTTATGGATCTGTTTCAGCAGCGTGTTGAGCAATCCCAGGTCATGCCTCACACCGATTTCCATGATCCTAATTTCGACGTCCCTTTCGCTATGGATTTCTCAGGCTCAGGCTCAGGGTTTGGCGGGGATTCTCTGCCGCCTCATGACAATAATAGTGGCTTTATCCTTGAAAATTATGGCTCCGGATCTGAGCCCCTGCCTACGGCATGCCCAATTCGGCCTTTTGACAACTCTGCACCGCTCTTGGCGTTCGTGTCAGATTCTGATGATGAGGAGAATGGGGTTTTGGGTGTGTGCGTAGATGAATACAATGTGCATGAGGATCATGACGATGTTGCTAGCATCCCTTTTTGTTGGGATTCATTACAACTGGATGATAACGGGGATAATGCCGAGGATTTTGAGTGGGAAGAGGTCGATGTTCGGGTTGATGAGAGGGAAGTTTTGAGCACGCTCACCGGCGACGATGACGTTTCGGTTTCCCCAATAAATGGGCTTGAAGAAGAAGAAGAAGAAGAAGAAGATGCAAGTGTCATGGGCGAAAATCTGGGTTGGCAAGTCTTGTTGAATGCCAATAACTTGGACACCAACCCTGATTTGGATCACGATTCTGAACCTTACTTTGGTGATCATGATGATTATATTTATACTGCAGAGTACGAAATGATGGTTGGCCAATTCGCTGACAATGAGAACCCCTTGGCTGGTCGCCCTCCAGCTTCTGTTTCAGTTGTTCGGAATCTTCCATCAGTGATTGTGGCCAAACAAGATATCCACAACAATGGTGCACTTTGTGCGGTTTGTAAGGATGAGTTCAATGTTGAAGAAAAAGCGAAGCAGTTGCCGTGTTCACATTTCTACCATGGAGAATGCATTATCCCGTGGTTGGGAATTCGGAACACTTGTCCTGTTTGTCGATATGAGTTGCCTACTGATGATGCTGATTATGAGCGTAGGAGGGTGCAAAGATCTGGCCGTAGCTGA 1218 0.4828 MPSQMADVTYLRHREREADDDSHLAVPDHTLFLESVDFDFDFDFYRSDPEFPPPDSPRGDPGSIPCTDLLDRENQVNFVMDLFQQRVEQSQVMPHTDFHDPNFDVPFAMDFSGSGSGFGGDSLPPHDNNSGFILENYGSGSEPLPTACPIRPFDNSAPLLAFVSDSDDEENGVLGVCVDEYNVHEDHDDVASIPFCWDSLQLDDNGDNAEDFEWEEVDVRVDEREVLSTLTGDDDVSVSPINGLEEEEEEEEDASVMGENLGWQVLLNANNLDTNPDLDHDSEPYFGDHDDYIYTAEYEMMVGQFADNENPLAGRPPASVSVVRNLPSVIVAKQDIHNNGALCAVCKDEFNVEEKAKQLPCSHFYHGECIIPWLGIRNTCPVCRYELPTDDADYERRRVQRSGRS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0026 405 SUPERFAMILY RING/U-box 325 390 - -
Mibi09g0026 405 SMART ring_2 343 383 IPR001841 -
Mibi09g0026 405 MobiDBLite consensus disorder prediction 233 252 - -
Mibi09g0026 405 Pfam Ring finger domain 343 384 IPR001841 -
Mibi09g0026 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 245 388 - -
Mibi09g0026 405 ProSiteProfiles Zinc finger RING-type profile. 343 384 IPR001841 -
Mibi09g0026 405 CDD RING-H2_RNF126_like 343 384 - -
Mibi09g0026 405 FunFam E3 ubiquitin-protein ligase RING1-like 304 390 - -
Mibi09g0026 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 390 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0026 Mibi-ChrMibi09 558132 559349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0026 41 390 C3H Transcription Factor Family AT5G60820 39.108 2.72e-58 194