Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g0009 ATGGAAAACCTAGGGATCTCACCATCAGGATGTCCACTTTCTTCTCAAAACCCAAACAAAAGCCAATCACCAACGCCGCCTGGTGAATCAGGTAATTATAATAAAAAGGTTATTCCAACAAGAAGAGGAGAGAGGAAGTACGTAGGGGTGAGACAAAGGCCTTCAGGGAGGTGGGTGGCTGAGATAAAGGGGTCATCACAGAAGCTGAGGCTATGGCTGGGAACTTATGACAGAGCAGAAGATGCTGCCATGGCTTATGACTCTGCAGCCAGGTTTCTAAGAGGAAGAAAAGCCAAGACCAACTTCCACTTCCCTCCAGGGATGATCCCCAACTCACACCACCAAATCTGCACCTTTGTGCGTAACAATCCAAGGGCTTACCACATTCTTAAGCATGCAATCATCATGAAAAACTACCATCATCATGCACTTGTTTCTTCCGCACCCAATAATAATAATAATATTCCAAGAGACGGATTCGGGACGCTCGTTGAACAAACCTTAGTTTGCTGTTCCACTACTATTACCTCTGATGATGTACAACAAGCTTCTTCTGGGAGCTGTGGGGTCTCATTTGGGAGTTCTAAGGTGTATTCTTCTGTGGTTGTGGCTCCTTCTTTCAGCGCCTCCTTTTCTCAGGAGGAGACCTCTTAA 654 0.4587 MENLGISPSGCPLSSQNPNKSQSPTPPGESGNYNKKVIPTRRGERKYVGVRQRPSGRWVAEIKGSSQKLRLWLGTYDRAEDAAMAYDSAARFLRGRKAKTNFHFPPGMIPNSHHQICTFVRNNPRAYHILKHAIIMKNYHHHALVSSAPNNNNNIPRDGFGTLVEQTLVCCSTTITSDDVQQASSGSCGVSFGSSKVYSSVVVAPSFSASFSQEETS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g0009 217 CDD AP2 46 102 IPR001471 GO:0003700|GO:0006355
Mibi09g0009 217 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Mibi09g0009 217 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Mibi09g0009 217 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Mibi09g0009 217 MobiDBLite consensus disorder prediction 1 30 - -
Mibi09g0009 217 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Mibi09g0009 217 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Mibi09g0009 217 FunFam ethylene-responsive transcription factor RAP2-11 45 104 - -
Mibi09g0009 217 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 140 - -
Mibi09g0009 217 MobiDBLite consensus disorder prediction 1 36 - -
Mibi09g0009 217 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
Mibi09g0009 217 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g0009 Mibi-ChrMibi09 300534 301187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g0009 46 105 AP2-EREBP Transcription Factor Family AT5G19790 66.129 1.36e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi09g0009 AP2 3.1e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g0009 09 300534 301187 Mibi09g0009 09 300534 301187 ECH