Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2661 ATGACAATTCGCAACCGCGGCAAGCCCTCAACCCCGTCTCCCTGTCCTTCTCCATTCTTCCAACTAGAACTGTTAGTACCATGGGACAGGAAGATATCTTTACTTTGGGAAAGTAGGCTGCTTGATATGATGGCTGCAAGCTGGGATGGAAGCAATGACCCTGGCAGTCAGTCAGATGAGAGCTATCATTTTGAGAGGCTGCATATTGAGCCTATTTACGATGCTTTTGTATGTCCACTGACAAAACAAGTTATGCGTGACCCTGTTACATTAGAAACTGGACAGACTTTTGAACGTGAAGCTATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGGCGCAAACTAGTTTGCCCTTTGACTCTGAAAGAACTAAAGAGCACAGAACTAAATCCCAGTATTGCTTTGCGTAACACCATTGAAGAGTGGACTGCAAGGAATGAAGCCGCACAGCTGGACATGGCTCGTAGGTCATTGAATATGGGTAGCCCTGAAAATGATACACTACAGGTTTTACATTACATCCAACATATCTGCCAAAGAAGTCGGTCTAATAAACACATTGTTCGTAATGCGGGGCTTATACCTATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGGTTCGTTGTACGGCTTTGGGAGCCCTTAGAATTGTCGTGGAGGAAGACGATGAGAATAAGGAATTGTTGGCTGAAGGGGACACTGTGCGTACAATAGTAAAATTTCTTTCTCATGAACTCTCTAAAGAAAGAGAAGAAGCTGTCTCTTTGCTTTATGAGCTCTCAAAATCAGAAACTCTGTGTGAGAAGATAGGTTCAATCAATGGGGCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGATATTTTGACTGTTGAGAAGGCTGAAAAAACATTGGAGAATCTGGAAAAGTGTGAGAATAATGTGCGACAGATGGCCGAAAATGGTAGACTGCAGCCTCTTTTGACACAACTTCTTGAAGGTCCACCTGAAACCAAACTGGCCATGGCTGGATACCTTGGTGAGCTGGTTTTGAATAATGATGTGAAGGTCCTTGTAGCCAAAACCGTGGGTTCATCTCTGATCAACATAATGAAAAGTGGTAATATGCAGTCCCGGGAAGCTTCGCTGAAAGCTCTTAATCAAATATCATCTTGCGATCCAAGTGCAAAGGTTTTGATAGAGGCTGGAATTCTATCACCGCTTGTTAATGACCTTTTTGCCGTGGGTCCTAATCAGCTTCCCATGCGACTAAAAGAAGTCTCTGCTACAATTCTTGCCAATGTTGTCAACTCAGGAGAAGACTTTGATTCCATCCCATTTGGACCACATCACGAGACTCTGGTTTCAGAGGGCATAGTTCATAATCTACTCCATCTTATCAGCAACACTGGTCCAGCTATTGAATGCAAACTTCTCCATGTTCTTGTTGGACTGACTAATTTTCCAACTACTGTTGTGAGTGTTGTCACAGCTATCAAAAGCTCTGGTGCCATTATCAGTCTTGTCCAATTTATTGAGGCTCCACAGAAAGATTTGCGTGTTGCATCTATAAAACTCCTTCAGAATTTGTCATCCCTCATGGGCCAGGAATTAGCTGATGCATTACGTGGTTCAGTTGGACAATTGGGCAGTCTAATTAAAGTCATATCAGAAAATACGGGAATTAGTGAAGAGCAGGCAGCAGCTGTTGGCCTTCTAGCTGATCTACCTGAGAGGGATTTGGGGCTCACAAGGCAGATGCTAGATGAAGGCGCGTTTCAGCTGGTCTACTCTAGAGTGATTAATATTAGGCAGGGAGAGATCAGAGGCAGTCGCTTTGTGACACCATTTCTTGAAGGGCTTGTGAAGATTCTTGCGAGGCTTACATATGTATTGGCTGATGAGCCTGATGCTATATCATTCTGTCGTGAGCAAAGTCTTGCTGCACTATTTATTGAACTACTTCAATCCAATGGACTTGATAATGTACAGATGGTTTCTGCTACTGCTTTGGAGAATTTGTCCCAAGAATCGAAGAATTTAACACAATTACCTGAGATGCCATCTCCTGGTTTTTGTGCCTCAGTATTTCCATGCCTTAGCAAACAGCCTGTCATAACAGGATTGTGTAGGCTCCACCGAGGGCTATGTTCATTAAAAGAAACCTTTTGTCTGATTGAAGGGCAGGCAGTACGTAAGTTAGTAGCCCTACTGGACCACACAAATGTGATCGTGGTCGAGGCAGCACTAGCAGCTTTATCTACCTTGTTAGACGATGGAGTAGATATTGAACAAGGGGTGATGGTGCTTTTTGAGGCAGAGGGAATTAAGCCTATCCTTGATGTGTTACTTGAGAAACGGACAGAAAATCTGAGGAGGAGGTCAGTTTGGGCAGTTGAGAGATTGTTGCGAACTGATGATATAGCCTATGAAGTTTCTGGTGATCAGAATGTGGGTACTGCACTTGTTGATGCTTTCCAGCATGGTGACTATCGAACTCGACAGATTGCTGAGCGTGCTCTCAAGCATGTGGACAAGATTCCAAACTTCTCAGGAATTTTTCCAAACATGGGATAG 2571 0.4345 MTIRNRGKPSTPSPCPSPFFQLELLVPWDRKISLLWESRLLDMMAASWDGSNDPGSQSDESYHFERLHIEPIYDAFVCPLTKQVMRDPVTLETGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSTELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENDTLQVLHYIQHICQRSRSNKHIVRNAGLIPMIVDMLKSSSRKVRCTALGALRIVVEEDDENKELLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVEKAEKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLAMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCDPSAKVLIEAGILSPLVNDLFAVGPNQLPMRLKEVSATILANVVNSGEDFDSIPFGPHHETLVSEGIVHNLLHLISNTGPAIECKLLHVLVGLTNFPTTVVSVVTAIKSSGAIISLVQFIEAPQKDLRVASIKLLQNLSSLMGQELADALRGSVGQLGSLIKVISENTGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVYSRVINIRQGEIRGSRFVTPFLEGLVKILARLTYVLADEPDAISFCREQSLAALFIELLQSNGLDNVQMVSATALENLSQESKNLTQLPEMPSPGFCASVFPCLSKQPVITGLCRLHRGLCSLKETFCLIEGQAVRKLVALLDHTNVIVVEAALAALSTLLDDGVDIEQGVMVLFEAEGIKPILDVLLEKRTENLRRRSVWAVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2661 856 SMART Ubox_2 75 143 IPR003613 GO:0004842|GO:0016567
Mibi08g2661 856 SMART arm_5 633 674 IPR000225 GO:0005515
Mibi08g2661 856 SMART arm_5 182 222 IPR000225 GO:0005515
Mibi08g2661 856 SMART arm_5 309 349 IPR000225 GO:0005515
Mibi08g2661 856 SMART arm_5 489 530 IPR000225 GO:0005515
Mibi08g2661 856 SMART arm_5 760 802 IPR000225 GO:0005515
Mibi08g2661 856 SMART arm_5 390 435 IPR000225 GO:0005515
Mibi08g2661 856 SMART arm_5 224 264 IPR000225 GO:0005515
Mibi08g2661 856 SMART arm_5 715 756 IPR000225 GO:0005515
Mibi08g2661 856 Pfam U-box domain 74 148 IPR003613 GO:0004842|GO:0016567
Mibi08g2661 856 Gene3D - 616 846 IPR011989 -
Mibi08g2661 856 SUPERFAMILY ARM repeat 496 844 IPR016024 -
Mibi08g2661 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 158 IPR013083 -
Mibi08g2661 856 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 235 IPR000225 GO:0005515
Mibi08g2661 856 SUPERFAMILY RING/U-box 65 153 - -
Mibi08g2661 856 Gene3D - 165 359 IPR011989 -
Mibi08g2661 856 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 61 852 - -
Mibi08g2661 856 SUPERFAMILY ARM repeat 164 481 IPR016024 -
Mibi08g2661 856 Pfam Armadillo/beta-catenin-like repeat 184 218 IPR000225 GO:0005515
Mibi08g2661 856 CDD RING-Ubox_PUB 76 121 IPR045210 -
Mibi08g2661 856 Gene3D - 360 530 IPR011989 -
Mibi08g2661 856 ProSiteProfiles U-box domain profile. 71 150 IPR003613 GO:0004842|GO:0016567
Mibi08g2661 856 Coils Coil 296 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2661 Mibi-ChrMibi08 44514934 44519214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2661 45 856 U-box Gene Family AT1G76390 65.479 0.0 1041