Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2636 ATGTCGCCGGCGGAGACCAGCAGGGGATGGAGTGGGGAGGAAGGCAGGCATTATCCTTCCCCACTCGCGTCTCACGAGGACGTCCTCAAGGACCCCACCCTATTCTGGGACACTCTCAGGCGTTTCCACTTCCTCATGGGTACCAAGTTCATGGTCCCTGTGATTGGAGGGAAGGAACTGGATTTGCACGTTCTTTACGTGGAGGTTACGGGGAGGAGCGGTTATGAGAAGGTGGTGGCAGAGAAGAAATGGAGGGAAGTGGGGAATGTGTTCAGGTTCTCTCCCACCACAACCAGTGCTTCTTTCGTACTGAGGAAACACTACCTGAGTCTTCTTTACCATTACGAACAAGTCCACTTCTTTAAGGCCCGGGGTCCTCTGTACACTCCATCTGCAGCTGCATTTTCTGTCAGCAATAACCAGTCATGGAGACCTGAATTAGCCATTGTGGAATACTCATCCCGGGCAAACGAGTGTCCTCAGTCCCATGACTCCCATAACGAAGATAATTCGTGCGGCGAGGGAGAAGTGAAGGGAATGATAGAGGGGAAATTCGACTGTGGGTATTTGGTGTCAGTGAAAGTGGGGACAGAAGTGCTAAGAGGGGTGCTCTACCATCCACAGCAATCGGAAACTTCGCACAATGGGAATGCTATCGTGGCCTACAGTAATGGAAAAGGTGGACGCGTGGGGAGGAGAAGGAGAAACAGAAGGAGGTGGGACCCTAACTACCCAAAGCCCAACAGAAGCGGCTATAACTTCTTTTTCGCCGAGAAGCATTACAAGCTCAAAGCGCTGTACCCAAACAGAGAGAGGGAATTCACCAAGATGATAGGCCAGTCATGGAGCAGTCTTAGCCCCGAGGAGAGAATGGTATACCAGAACATCGGGTTGAGGGACAAGGAAAGGTACAAGAGAGAATTGAGGGAGTACAAGGAGAAGATGAAGCTCGCTCCTCCCACTGTGGAAGAGCTTTCCAGTATTTAA 987 0.5127 MSPAETSRGWSGEEGRHYPSPLASHEDVLKDPTLFWDTLRRFHFLMGTKFMVPVIGGKELDLHVLYVEVTGRSGYEKVVAEKKWREVGNVFRFSPTTTSASFVLRKHYLSLLYHYEQVHFFKARGPLYTPSAAAFSVSNNQSWRPELAIVEYSSRANECPQSHDSHNEDNSCGEGEVKGMIEGKFDCGYLVSVKVGTEVLRGVLYHPQQSETSHNGNAIVAYSNGKGGRVGRRRRNRRRWDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGQSWSSLSPEERMVYQNIGLRDKERYKRELREYKEKMKLAPPTVEELSSI 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2636 328 MobiDBLite consensus disorder prediction 218 245 - -
Mibi08g2636 328 Gene3D - 22 125 IPR036431 GO:0003677
Mibi08g2636 328 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Mibi08g2636 328 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 317 - -
Mibi08g2636 328 Pfam HMG (high mobility group) box 245 312 IPR009071 -
Mibi08g2636 328 MobiDBLite consensus disorder prediction 1 22 - -
Mibi08g2636 328 SUPERFAMILY ARID-like 25 128 IPR036431 GO:0003677
Mibi08g2636 328 SUPERFAMILY HMG-box 242 315 IPR036910 -
Mibi08g2636 328 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 245 312 IPR009071 -
Mibi08g2636 328 SMART bright_3 30 121 IPR001606 GO:0003677
Mibi08g2636 328 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677
Mibi08g2636 328 SMART hmgende2 244 313 IPR009071 -
Mibi08g2636 328 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Mibi08g2636 328 SMART ARID_2 26 116 - -
Mibi08g2636 328 Gene3D High mobility group box domain 230 319 IPR036910 -
Mibi08g2636 328 CDD HMGB-UBF_HMG-box 245 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2636 Mibi-ChrMibi08 44097542 44099412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2636 16 317 ARID Transcription Factor Family AT1G76110 64.725 3.66e-132 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mibi08g2636 ARID 1.2e-16 CL0123