Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2624 ATGGTTACTGCACCTGATTCCTCTGCGCCAACTAGTGCTGGCGATACCAGCAGCCCGAAGTTCCCGCGAAAAAACTTGACATCCCCATGGGCTCAAGTTGTACGCGGCGGAGAGGGCGAATCCCATCCATCGCCGCCTTCCTCTTCCTCATCACTCACGACATCTGTGCCATTGTCTGATTTTTCTTCTAAAGACGCTTTTACAATGCAGCTGCTGGATAACATTGATGCTGACGCTTCCGACGCCAATGTGGGTCGTTCTAAGAGGCCCGCTTGGAGCAAGCCTTCTAATGGTGTTGTTGAAGCTGGTCCAGTTATGGGTGCTGTTTCTTGGCCGGCATTATCTAAATCCACCAAAATATCGTCTGAATCCACGTCCAAGACTGCCTTTGATGGATCACTCTCCCCTTCTCAGGGGTCTGTCACTGTACAATTTCCTCAAAAACAACCTACTAACAATGCAAAGCATAACTCTGCGACAAACTATGCTGTGCATCATAGACAAAAGTCAATGAAGCGTGGAGGTAGCAATAGCATTGGGGTTGGTCATGCTCAGAGCAGCTTTTCTAACCCTCCCCTTCCCCCGCCCCCGCCCTTTCCAGTACTTCCCATACCAGCAAGTAGCTATGGCAATGTGGTGCCAGGGGTTCCAGATCATTCTGCAAGGGAAATTCCTTACAGGAACAATAAATGGGATACAAGACCACCAGTTGGGGGTTTTGTGCCTGCTGTGAATGATCACTGGAATCTCCCTCGCAGAGGCAATTTTGGGCCCCATCAACGCGGGGATGGATCATATCATGGGGGTAGGCGTGACCAGGACCGTGGAAATCATGCAAACACTAGAGATGCTCAAGTACACCAACAGAGGATGTCTCCTAGGGGATTAGTGAGGCACCCGCCTCCTATTACTCCTGCATTTGTTGCCCCTCCACCCATGGGACCCTTTGCAAACCCCATGGGTTTTCCAGAATTTTGTTATTTCCCAACTCTACCATTAGGGTCATTCAGGGGCATGCCGTTCATAACTCATGGTCCTCCTCCTGCCTTGTTTCTCCCTGTTGCAGAACCTCCTCCAACAAGTATAATTGTGAACCAAATTGATTATTACTTTAGTGATGCTAATCTAGCAAAAGATGAGTTTCTAAGATCTAAAATGGATGAACACGGTTGGGTTCCCATTGCTTTGATAGCAGACTTCCCTCGGGTTAAAAGTTTGACAGACAATATTCAGCTGATACTGGATTCATTGAGAAATTCTACAGTTGTGGAAGTACAGGGTGACAAGTTGCGGAGGCGAAATGAATGGATGAAGTGGCTACCCTCATGGCTGCTTGGATCTGATTCTGATTCATCCTCTCCAGTTGGAACAAGTTGCAATAACTTAGTTGCTGATTTTCAGAAGATTGCTCTGGTTGAAGCTATCGCAAATAAAGGGAATCCAAAGGCCCTTGAAGGAAGATCGCCAACAGATTTTTCCAGTCAACCTTAA 1491 0.4762 MVTAPDSSAPTSAGDTSSPKFPRKNLTSPWAQVVRGGEGESHPSPPSSSSSLTTSVPLSDFSSKDAFTMQLLDNIDADASDANVGRSKRPAWSKPSNGVVEAGPVMGAVSWPALSKSTKISSESTSKTAFDGSLSPSQGSVTVQFPQKQPTNNAKHNSATNYAVHHRQKSMKRGGSNSIGVGHAQSSFSNPPLPPPPPFPVLPIPASSYGNVVPGVPDHSAREIPYRNNKWDTRPPVGGFVPAVNDHWNLPRRGNFGPHQRGDGSYHGGRRDQDRGNHANTRDAQVHQQRMSPRGLVRHPPPITPAFVAPPPMGPFANPMGFPEFCYFPTLPLGSFRGMPFITHGPPPALFLPVAEPPPTSIIVNQIDYYFSDANLAKDEFLRSKMDEHGWVPIALIADFPRVKSLTDNIQLILDSLRNSTVVEVQGDKLRRRNEWMKWLPSWLLGSDSDSSSPVGTSCNNLVADFQKIALVEAIANKGNPKALEGRSPTDFSSQP 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2624 496 CDD LAM 363 433 - -
Mibi08g2624 496 Pfam La domain 363 419 IPR006630 -
Mibi08g2624 496 MobiDBLite consensus disorder prediction 172 195 - -
Mibi08g2624 496 MobiDBLite consensus disorder prediction 1 59 - -
Mibi08g2624 496 SMART la 357 435 IPR006630 -
Mibi08g2624 496 MobiDBLite consensus disorder prediction 1 25 - -
Mibi08g2624 496 SUPERFAMILY "Winged helix" DNA-binding domain 353 441 IPR036390 -
Mibi08g2624 496 MobiDBLite consensus disorder prediction 42 59 - -
Mibi08g2624 496 MobiDBLite consensus disorder prediction 264 281 - -
Mibi08g2624 496 MobiDBLite consensus disorder prediction 173 188 - -
Mibi08g2624 496 MobiDBLite consensus disorder prediction 78 102 - -
Mibi08g2624 496 Gene3D - 355 440 IPR036388 -
Mibi08g2624 496 PANTHER LUPUS LA PROTEIN-RELATED 108 485 IPR045180 -
Mibi08g2624 496 MobiDBLite consensus disorder prediction 115 142 - -
Mibi08g2624 496 ProSiteProfiles La-type HTH domain profile. 353 442 IPR006630 -
Mibi08g2624 496 MobiDBLite consensus disorder prediction 249 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2624 Mibi-ChrMibi08 43985373 43989700 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2624 08 43985373 43989700 Mibi08g2624 08 43985373 43989700 ECH