Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2594 ATGGCTTTCGTCGAAGATAAGGTTAAAACCGGAGGATTAATTGTTGGGGGCCAATCTCTAGCTGCTGAGATGAAGATGTTGAAAGAATTGCAGGATCAATCTGGAGTCCGAAAGAGTATAAATTCCGAGCTATGGCATGCTTGCGCTGGCCCACTTGTAAACCTGCCTCAGATAGGGAGTCTGGTGTATTACTTCCCTCAGGGACATAGTGAACAGGTGGCGGCTTCCACCAGAAGATCAGTAACTTCACAGGTTCCAAACTACCCGAATCTTCAATCTCAGTTGCTTTGCCAAGTTCAAAATGTTGCACTTCATGCAGATAAAGACACGGACGAAATATACGCTCAAATGAGTCTCCAACCATTGAATTCTGAAAAAGATGTCTTTCCTATATCTGATTTTGGGATGAAGCCTAGTAAACATCCAAGTGAGTTTTTCTGCAAAACTTTGACTGCTAGCGATACAAGCACGCACGGTGGCTTTTCTGTGCCTCGCAGGGCTGCAGAAAAGCTCTTTCCTCCATTGGATTATACCATTCAACCCCCAACACAAGAACTCGTTGTCCGAGACTTACATGACAATACCTGGACATTCCGACATATATACCGAGGCCAGCCGAAGAGACATCTTCTCACAACAGGATGGAGTTTATTTGTTGGCTCAAAGAGGCTTAAAGCTGGTGATGCTGTTCTTTTTATCAGGGACGAGAAATCGCAATTGTTAGTTGGTATAAGGCGTGCAAATCGTCAACAGACAACTTTGCCGTCGTCAGTCCTCTCCGCTGATAGCATGCACATCGGTGTGCTAGCTGCTGCAGCTCATGCTGCTGCTAATCAGAGCCCTTTTACTGTTTTCTACAACCCAAGGGCATGCCCTTCAGACTTTGTTATCCCACTGGCTAAATATAGAAAAGCTGTATATGGTACCCAACTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGCAAGCGCAGGTATATGGGCACAATAGTTGGTGTCAGTGACTTGGATCCTTTGAGGTGGCCTGGTTCAAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAGAACAGAGTGAGTGCTTGGGAAATTGAGACTCCTGAAAGTCTTTTTATCTTTCCTTCTCTGACTTCAAGTCTGAAACGACCATTTCAACCTGGACCTTTTGGTACAGAAAATGAGTGGGGGGGCTTGGTAAGAAGGCCTTTTATACAAGTTCCTGAAAATGCAAATTTGGAGCTCCCAAACTCTTTACAAAATCTATACATGGAACACCTGATGAAAGTCCTTTTCAAACCTCAACTGGCGAACAATCCTGGAGCCTTTCCATCAGTCATGCAACAAGAATCTGCTGCCAGGAGTGATCTCACACAAGATTTAAAGAAGACACTGGCGACAGACAACCAAAAAGCTCAAACTGTATGTTCAGGGAGCATACCTCCAAAAAATATAGATCATCCTCACTCTCTCCCTGACCAATCCAGTGCCTTCAACTATCATTCCCTGTTGAAAAGTGATCAAACCGGGAAATTGCATCCTCTGCCTAAAATTGAGAATGCTCAATCTTCTGGAGCAGTTTCTGATAAGACAAAAGTAGAGTCTGTGGAAATAACTGATCATATTTTTGACTGTCCTTCAACAGAAGGATGCAGCAGCATGGAAAAAGTGGCGCTGAACCCTATGAATCCACCAGGCCAAGCGAGTCAAACGACATTGCTTAATCAAAACCAGAGTCCATGGGCCGTGCAGCCTCAGTTAGAATCAACAATACCTAATTCTCAAATGGTTGATATTCCTCCATCTGAATATGCTCTTTTAAATGGCCTGCTTCCTCAGGCAGACCTCGATGAATGGATGCTGTATTCTTCCTGCCCATCTTTTCCTGGAGTGAGTAGATCAGCTGGGCCTTTGCAAGAACAGTCCACACTTATCCCACAAGCAGTTAATACAGCACCTTTACCCTCCGCGAGTCAAGAAATGTGGGATCAGTATCTCAAAAATTCGAAGTCCTTACCTCAAGCAGACCAGTTAACACCCATCTCACAGCAAGCCTTCCAGAACTTTAATTGTTTATCTAATTCAAACAATCTGAGGGATCTATCAGCTGAGAGCAACACACAAAGCGGGGTGTATAATAGTGTCAATGTTGATGCTAGTAACAGCGTAAGTACTATGGTTGATCCTTCTACTTCTAGTACCATTTTGGACGATTTTTGTGTGTTGAAGGATGGGGAATTCCAGAACCCATCAGATTGCATGGTTGGGAACGTAAGTTCAAGCCAGGACGTCCAGTCTCAGATAACCTCCGCAAGTCTAGCTGATTCACACGTTTTCCCTCGGCAAGACATACATGATAACTGCGGTGGTGGTACATCTTCAAGCCACGTTGATTTCGATGAAAGCAGCTTTCTGCAGAATAACTCATGGCCGCAAGTTGCTGCACCTGTGCGAACCTACACCAAGGTTCAAAAAGCAGGGTCAGTAGGAAGATCATTAGATGTAACCACTTTCAAGAACTACGGGGAACTGATCTCCGCGATTGAGCGTATGTTTGGACTTGAGGGTCTGCTGAACGACACCAAAGGTTCAGGATGGAAATTGGTATATGTAGATTATGAGAACGATGTTCTGCTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGATGTGTGCGCTGCATCAGGATCTTATCACCTGTGGAAGTGAAACAGATGAGCGAGGAGGGAATGAAGCTTCTAAACAGTGCTGCGGTGCAACAGTTCAACGGACCCATGTCTGGTGGCTGCCCTTAG 2826 0.4501 MAFVEDKVKTGGLIVGGQSLAAEMKMLKELQDQSGVRKSINSELWHACAGPLVNLPQIGSLVYYFPQGHSEQVAASTRRSVTSQVPNYPNLQSQLLCQVQNVALHADKDTDEIYAQMSLQPLNSEKDVFPISDFGMKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGIRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANQSPFTVFYNPRACPSDFVIPLAKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGVSDLDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSAWEIETPESLFIFPSLTSSLKRPFQPGPFGTENEWGGLVRRPFIQVPENANLELPNSLQNLYMEHLMKVLFKPQLANNPGAFPSVMQQESAARSDLTQDLKKTLATDNQKAQTVCSGSIPPKNIDHPHSLPDQSSAFNYHSLLKSDQTGKLHPLPKIENAQSSGAVSDKTKVESVEITDHIFDCPSTEGCSSMEKVALNPMNPPGQASQTTLLNQNQSPWAVQPQLESTIPNSQMVDIPPSEYALLNGLLPQADLDEWMLYSSCPSFPGVSRSAGPLQEQSTLIPQAVNTAPLPSASQEMWDQYLKNSKSLPQADQLTPISQQAFQNFNCLSNSNNLRDLSAESNTQSGVYNSVNVDASNSVSTMVDPSTSSTILDDFCVLKDGEFQNPSDCMVGNVSSSQDVQSQITSASLADSHVFPRQDIHDNCGGGTSSSHVDFDESSFLQNNSWPQVAAPVRTYTKVQKAGSVGRSLDVTTFKNYGELISAIERMFGLEGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPVEVKQMSEEGMKLLNSAAVQQFNGPMSGGCP 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2594 941 Pfam AUX/IAA family 826 913 IPR033389 -
Mibi08g2594 941 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Mibi08g2594 941 CDD B3_DNA 145 246 IPR003340 GO:0003677
Mibi08g2594 941 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mibi08g2594 941 Gene3D - 310 382 - -
Mibi08g2594 941 Gene3D - 824 917 - -
Mibi08g2594 941 ProSiteProfiles PB1 domain profile. 828 912 IPR000270 GO:0005515
Mibi08g2594 941 FunFam Auxin response factor 144 248 - -
Mibi08g2594 941 Gene3D - 144 247 IPR015300 -
Mibi08g2594 941 SUPERFAMILY DNA-binding pseudobarrel domain 134 275 IPR015300 -
Mibi08g2594 941 SMART B3_2 146 248 IPR003340 GO:0003677
Mibi08g2594 941 FunFam Auxin response factor 310 382 - -
Mibi08g2594 941 SUPERFAMILY CAD & PB1 domains 827 907 - -
Mibi08g2594 941 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 918 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mibi08g2594 941 FunFam Auxin response factor 824 917 - -
Mibi08g2594 941 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2594 Mibi-ChrMibi08 43672688 43677736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2594 19 937 B3 DNA Binding Superfamily AT1G19850 58.879 0.0 990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mibi08g2594 AUX_IAA 1.5e-09 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2594 08 43672688 43677736 Mibi08g2594 08 43672688 43677736 ECH