Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2579 ATGAAGATTCTGTGCGACGTCTGTAATAATCACGAGGCTTCCCTTTTCTGCACCGCCGACGAAGCCGCCTTATGTGATGCCTGCGACCACCGTGTCCACCATGCCAATAAGCTCGCCTCCAAGCACCACCGCTTTTCTCTTCACCGCCCTTCTCCTAACCAATTCCCTCGCTGCGATATTTGCCAGGAGAGAAGAGCTTTCGTGTTCTGTCAACAGGACAGAGCTATTCTATGCAAAGATTGTGACACGCCGATTCACTCAGCCAACGACCACACCCGAAACCACAATAGGTTTTTTCTAACTGGGATTAATCTTTCAGCTGCTTCAACGCCCTATTCACCATCCACCTCCAATCCCGTTTTGACGAATGGTTCTGATTCCACGTCTAATTCCAAGTCAGCGAAGAACTCTGTTTCTACTTCTTCTGCCATCATCTCACATCCCACTTCAATGGACAAGGCTTCATGTTCAACAGCTTCAACACATGCCACAGTCAACAAGGATGGGGGAAACTTGTCAACGAACGAAGGGATTGTTTCCACAAGCAGCATATCTGAGTATTTGATAGAAACTCTACCAGGCTGGCAGGTCGACGACTTTCTCGATTCTTCTGCTGTTCCCTTCGGTTTCAGTAAGGGTGATGATATGTTGACTGTGTTAGATGCTAATATTGAGGGGAAAATGGGTTCTTTCTCTACGGAGAGTATGGGGATCTGGGTTCCTCAGGCACCCACTCCTCTGTTTACCCAACAAGTGGATCGGCAGATCAAGTTCCAAGAGACAAAAGAGACGACCAATGTTGAGGCCAGCAGATCAAGGTCGAGAGATGATAATTTCATAGTTCCACAAATCAACCCTTCTATTGGGTCCAAGAGATCCAGATTTCTTTGGTAG 894 0.4732 MKILCDVCNNHEASLFCTADEAALCDACDHRVHHANKLASKHHRFSLHRPSPNQFPRCDICQERRAFVFCQQDRAILCKDCDTPIHSANDHTRNHNRFFLTGINLSAASTPYSPSTSNPVLTNGSDSTSNSKSAKNSVSTSSAIISHPTSMDKASCSTASTHATVNKDGGNLSTNEGIVSTSSISEYLIETLPGWQVDDFLDSSAVPFGFSKGDDMLTVLDANIEGKMGSFSTESMGIWVPQAPTPLFTQQVDRQIKFQETKETTNVEASRSRSRDDNFIVPQINPSIGSKRSRFLW 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2579 297 FunFam B-box zinc finger protein 21 1 98 - -
Mibi08g2579 297 Pfam B-box zinc finger 55 93 IPR000315 GO:0008270
Mibi08g2579 297 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Mibi08g2579 297 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 287 - -
Mibi08g2579 297 MobiDBLite consensus disorder prediction 261 275 - -
Mibi08g2579 297 Gene3D Classic Zinc Finger 1 98 - -
Mibi08g2579 297 MobiDBLite consensus disorder prediction 261 280 - -
Mibi08g2579 297 MobiDBLite consensus disorder prediction 111 144 - -
Mibi08g2579 297 SMART bboxneu5 4 47 IPR000315 GO:0008270
Mibi08g2579 297 SMART bboxneu5 53 100 IPR000315 GO:0008270
Mibi08g2579 297 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mibi08g2579 297 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Mibi08g2579 297 CDD Bbox1_BBX-like 4 47 - -
Mibi08g2579 297 CDD Bbox1_BBX-like 58 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2579 Mibi-ChrMibi08 43521545 43522686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2579 1 295 C2C2-CO-like Transcription Factor Family AT1G75540 42.941 2.23e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Mibi08g2579 zf-B_box 1e-06 No_clan