Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2572 ATGCTGAAATCAGGGATGGGAATAGAGGAGCGAAAGCAGGTGAAACGGCCAGCGCAAGCGAGCTCAAGGAAAGGGTGCATGAGAGGGAAAGGAGGCCCTGAGAATGCAAGCTGCACCTACAAGGGCGTCCGCCAGAGGACTTGGGGGAAATGGGTGGCCGAGATCCGCGAGCCCAACCGTGGGGCCCGCCTCTGGCTCGGCACCTTCGACACCTCCCATGACGCCGCCCTCGCCTACGACGCCGCCGCCCGCAAACTCTACGGCTCCGACGCCAAGCTCAACCTCCCCCACCTCAACAATCCCACTCCTCCTCCGCCACACATCCCTTCAGGGAACGTCCCCAACAACAACAATGCTCCTACTCATCAGATGATGATGATGATGATGATGATGCCTTCTCCTCATCAGCCAGCTGCAGCAGTGTACAGCCCTACCTCTAGCTCTAGCTCTACCTCTGCAGGATCCACCATGTCCCTTCCCTTCAGCTCCTGCGACGACAACATCAACAACATCAACATGAAGCCCATCGAGAATAATGAGGAGGTGGAGGATTTCTCCCATTTCTGGGGCTCCATCAATGACTCCCTCCCTGTCCCTGACTTTGATGATTCTATCTGGACTGAAGCCGCCATGTCTCTCGATTATCATCCCATCTTGTCCGATGATGCCTCCATTTTCGCTGACGTCGCCCCCTCCGACTCTCTCCACACTCCATGGTGCATCTGA 726 0.5675 MLKSGMGIEERKQVKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDAAARKLYGSDAKLNLPHLNNPTPPPPHIPSGNVPNNNNAPTHQMMMMMMMMPSPHQPAAAVYSPTSSSSSTSAGSTMSLPFSSCDDNINNINMKPIENNEEVEDFSHFWGSINDSLPVPDFDDSIWTEAAMSLDYHPILSDDASIFADVAPSDSLHTPWCI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2572 241 CDD AP2 38 94 IPR001471 GO:0003700|GO:0006355
Mibi08g2572 241 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Mibi08g2572 241 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Mibi08g2572 241 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Mibi08g2572 241 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 13 174 - -
Mibi08g2572 241 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Mibi08g2572 241 MobiDBLite consensus disorder prediction 139 158 - -
Mibi08g2572 241 MobiDBLite consensus disorder prediction 1 17 - -
Mibi08g2572 241 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Mibi08g2572 241 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Mibi08g2572 241 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Mibi08g2572 241 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Mibi08g2572 241 MobiDBLite consensus disorder prediction 1 38 - -
Mibi08g2572 241 MobiDBLite consensus disorder prediction 97 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2572 Mibi-ChrMibi08 43393265 43393990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2572 15 238 AP2-EREBP Transcription Factor Family AT1G75490 45.455 1.82e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi08g2572 AP2 7.1e-15 CL0081