Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2551 ATGCCTTTCAAAAATCTCGTTCGCGAGCTCAGGGATAGTCGAGACGGCATGGGCATGGGCAATGTTTCTATAAGAGGGATAGAAGCAAATCGCATCTCTTCCCGTGGAAGATCGCTTATTGCACCTGAATTCTCCTCACCACCTTCGGTAGTGACTCAGCGAAGTCCCTGGGCTAACTTACCATCTGAGTTGTTATTAGACATAATTCAGAGGGTGGAAGCAAGTGAAACTTCATGGCCTGGCCGCCGGGCGGTTGTAGCTTGTGCCTCAGTTTGTAGGTCATGGAGGAAGATAACAGAGGAGGTGGTGAACACCCCAGAACAGTGTGGTTGGCTTACCTTCCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCCATCCAGTGTTTTATAAAGAGAGAAAGGGCGACTTCCAAATATCTTTTATATCTCGGTCTGAGTCCAGCTCTCTCTGGGGATATGAGTAAACTGCTACTGGCAGCAAAGAGGATAAGACGGACATTATGTACAGAGTTCATAATATCCTTGGTTGCAGATGATTTTTCTAAAGCAAGCAATACGTACGTTGGAAAGCTGAGGTCTAATTTTCTAGGTACCAAGTTCACGATCTTGGATAGTCATTTCCCGTTTGATTCTTCCCTACAGTTGAATAGTAAATCGCAGCAAAGAATCCATTCGAAGCAGCTTCTTCCAAGGGCTCCTGCAACACAGCATAATGTGGCCACGATATCCTATGAGCTCAATGTTCTCCGCACAAGAGGTCCAAGAAGAATGCGGTGTACCATGTATTCAATTCCGGCGTCTGCCATCGAAGAAGGAGGCACTTCTCCTACTCCTTTTAAGTTTACCAGATGCCTTGATGAGAATCAATCTTCGACGCCCATTTCAAAACAAAGAAAGCCAGGAGTCCAGGAGCATGGCTCCAATAGCGAAGATAAGCCCCCAGAATCGAACCAAATCACTAGGGAGCCACTGATTTTGAAAAACAAAGCTCCTAGATGGCATGAACAACTACAATGTTGGTGCTTGAATTTCAAGGGACGTGTTACAGTGGCCTCGGTAAAGAACTTCCAGCTAGTAGCTGCTGCAGAACCTCAACAAAATGTTTCAGCGGTAGACCAGGATAGAGTAATACTACAATTTGGGAAAATTGGAAAGGACATATTCACCATGGATTACCGTTATCCCCTCTCTGCATTTCACGCCTTCGCAATATGCTTGAGCAGCTTTGACACCAAACCTGCTTGCGAGTGA 1257 0.4606 MPFKNLVRELRDSRDGMGMGNVSIRGIEANRISSRGRSLIAPEFSSPPSVVTQRSPWANLPSELLLDIIQRVEASETSWPGRRAVVACASVCRSWRKITEEVVNTPEQCGWLTFPISLKQPGPRETPIQCFIKRERATSKYLLYLGLSPALSGDMSKLLLAAKRIRRTLCTEFIISLVADDFSKASNTYVGKLRSNFLGTKFTILDSHFPFDSSLQLNSKSQQRIHSKQLLPRAPATQHNVATISYELNVLRTRGPRRMRCTMYSIPASAIEEGGTSPTPFKFTRCLDENQSSTPISKQRKPGVQEHGSNSEDKPPESNQITREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPQQNVSAVDQDRVILQFGKIGKDIFTMDYRYPLSAFHAFAICLSSFDTKPACE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2551 418 Gene3D - 51 103 - -
Mibi08g2551 418 MobiDBLite consensus disorder prediction 290 304 - -
Mibi08g2551 418 Pfam Tub family 118 413 IPR000007 -
Mibi08g2551 418 PRINTS Tubby superfamily signature 375 394 IPR000007 -
Mibi08g2551 418 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Mibi08g2551 418 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Mibi08g2551 418 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Mibi08g2551 418 PRINTS Tubby superfamily signature 396 418 IPR000007 -
Mibi08g2551 418 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Mibi08g2551 418 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Mibi08g2551 418 Gene3D Tubby Protein; Chain A 115 418 IPR025659 -
Mibi08g2551 418 SUPERFAMILY Tubby C-terminal domain-like 106 418 IPR025659 -
Mibi08g2551 418 PANTHER TUBBY-RELATED 52 416 - -
Mibi08g2551 418 SUPERFAMILY F-box domain 52 124 IPR036047 GO:0005515
Mibi08g2551 418 Pfam F-box domain 57 103 IPR001810 GO:0005515
Mibi08g2551 418 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Mibi08g2551 418 MobiDBLite consensus disorder prediction 305 319 - -
Mibi08g2551 418 ProSitePatterns Tub family signature 2. 403 418 IPR018066 -
Mibi08g2551 418 MobiDBLite consensus disorder prediction 290 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2551 Mibi-ChrMibi08 43165160 43167144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2551 1 418 TUB Transcription Factor Family AT2G18280 57.177 6.38e-162 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mibi08g2551 Tub 1.7e-101 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2551 08 43165160 43167144 Mibi08g2551 08 43165160 43167144 ECH