Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2508 ATGGCAAGCAGTTTTGGGGAATCAACGAGTAGATCACCTCCTAGCCCTTCCTTCTCTGGCAACAATAGTAACAGCGATGCAGGCAATTTTGAATGCAACATATGCTTTGACTTGGCACAAGACCCTATCATTACTTTATGCGGCCATCTTTTCTGTTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGCCCAGTGTGTAAGGCCCTCATTGAGGAGGAGAAATTGGTCCCCTTATATGGGAGGGGTAAATCCTCAGCTGACCCAAGGTCGAGGTCTGTTCCTGGTATGAACATACCGCATCGTCCATCAGGTCAGCGACCTGAAACTGCCCCACCGCCTGAATCTAATCACTTTCCTCAGCACGGGTTTGGATTCATGGGTGGGTTGGGAGGCTTTGCTCCAATGGCAACAACAAGATTTGGAAATTTTACATTCTCCACAGGATTTGGTGGTTTTATCCCATCTTTGTTTAACTTTCAGCTGCATGGATTTCATGACGGAGCTATGTATGGTAATCCACCTGGTTTTCACTACGGATTCCCTAATTCATTTCATGGTGGCCATGCTCATGGCTATTATCCTCGCCATCCAGGTCAAAGGCAGCAAGATTATTATCTAAAGAGGATCCTTATGCTTGTTGTTTTTTGTGTTGTTCTTGCTCTTATTTGGCAATAG 693 0.4531 MASSFGESTSRSPPSPSFSGNNSNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALIEEEKLVPLYGRGKSSADPRSRSVPGMNIPHRPSGQRPETAPPPESNHFPQHGFGFMGGLGGFAPMATTRFGNFTFSTGFGGFIPSLFNFQLHGFHDGAMYGNPPGFHYGFPNSFHGGHAHGYYPRHPGQRQQDYYLKRILMLVVFCVVLALIWQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2508 230 SMART ring_2 32 72 IPR001841 -
Mibi08g2508 230 MobiDBLite consensus disorder prediction 86 122 - -
Mibi08g2508 230 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Mibi08g2508 230 SUPERFAMILY RING/U-box 29 85 - -
Mibi08g2508 230 CDD RING-HC_AtRMA_like 30 74 - -
Mibi08g2508 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 86 IPR013083 -
Mibi08g2508 230 MobiDBLite consensus disorder prediction 1 22 - -
Mibi08g2508 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mibi08g2508 230 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Mibi08g2508 230 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Mibi08g2508 230 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2508 Mibi-ChrMibi08 42817217 42817909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2508 30 213 C3H Transcription Factor Family AT1G19310 67.196 8.84e-86 252