Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2506 ATGGGTTGGCTCAGCAAAATTTTTAAAGGCTCTGACCATAAAGTTTCGGAAGGGCATTATAGTGCAAGTTATAGGGAGGATACAGATTATTACTTACCATCAACTTCAGGGGATGTTTGGTCAGAGAATGAGAATGAAGATATAGATCGTGCTATTGCACTTTCGCTTGTAGAGGAAAATCAGCAAAGAAAGAACCTAAACGACCGCAAGTCACTATTAGAAGAAGACGAACAACTTGCTAGAGCAATACAAGAAAGTCTAAATGTTGAGTCTCCTCCCAGATATGGAAATGGAAATATGTATCAACCTATGCCTGTGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGTTGTAATTCTGAGATTGGTTATGGGCGATATTTAAATTGCTTGAGTGCATTCTGGCATCCTGAATGCTTCCGTTGCCGTGCCTGCAACCTCCCAATCTCTGATTATGAGTTTTCCACGTCTGGGAATTACCCTTATCATAAGTCATGCTACAAAGAAAACTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGAGCACATCCTTTTTGGATCCAGAAATATTGCCCTTCTCACGAACATGATGGCACTCCGCGCTGTTGCAGCTGCGAGCGTATGGAGCCACGAGAGACAGGATACATTGCTCTTAATGATGGTCGAAAGCTGTGCCTGGAATGTCTGGATTCTGCTATCATGGATACTAGCGAGTGCCAACCCCTTTATTCAGACATACAAAAATTTTATGAAGGTCTTCATATGAGACTGGATCAGCAAGTTCCATTGCTCTTGGTTGAAAGACAGGCACTGAATGAAGCAAGAGAGGGGGAGAAGAATGGCCACTATCACATGCCTGAGACCAGGGGACTCTGCCTTTCTGAAGAACAGAATATCACCACTGTCTTGAGGCGACCAAGGATTGGATCAGGCAATAGGGCAGTAGACATGAGAACACAACCCTACAAATTGACTCGACGCTGTGATGTGACAGCAATTCTCATTTTGTATGGCCTTCCCAGGTTGCTTACTGGATCAATCCTTGCTCATGAAATGATGCATGCATGGCTGCGACTTAAAGGTTATCGGACTCTCAGACAAGATGTTGAAGAAGGTATCTGTCAGGTAGTGGCGCATATGTGGTTGGAGTATGAACTTTCATCTGCATCATCGGCCTCATCTTCGTCTTCATCCTATACATCCAGGAAAGCCAAAAGACCTCTATTTGAGAGGAAGCTTGGGGAATTTTTCAAGCACCAGATCGAATCAGACATTTCTCCCGTTTATGGTGATGGATTCAGGGCTGGCCACCTGGCAGTTCGCAAATATGGTCTCGAAAACACCCTTCACCATATTTGGATGACTGGGAATTTTCCCCTATAA 1419 0.439 MGWLSKIFKGSDHKVSEGHYSASYREDTDYYLPSTSGDVWSENENEDIDRAIALSLVEENQQRKNLNDRKSLLEEDEQLARAIQESLNVESPPRYGNGNMYQPMPVYFPMGSRICAGCNSEIGYGRYLNCLSAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKENYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMEPRETGYIALNDGRKLCLECLDSAIMDTSECQPLYSDIQKFYEGLHMRLDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQNITTVLRRPRIGSGNRAVDMRTQPYKLTRRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLRQDVEEGICQVVAHMWLEYELSSASSASSSSSSYTSRKAKRPLFERKLGEFFKHQIESDISPVYGDGFRAGHLAVRKYGLENTLHHIWMTGNFPL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2506 472 Pfam Protein DA1 264 466 IPR022087 -
Mibi08g2506 472 ProSitePatterns LIM zinc-binding domain signature. 115 149 IPR001781 -
Mibi08g2506 472 ProSiteProfiles LIM domain profile. 113 173 IPR001781 -
Mibi08g2506 472 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
Mibi08g2506 472 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 74 93 IPR003903 -
Mibi08g2506 472 SMART uim 43 62 IPR003903 -
Mibi08g2506 472 SMART uim 74 93 IPR003903 -
Mibi08g2506 472 CDD LIM_DA1 115 167 - -
Mibi08g2506 472 PANTHER PROTEIN DA1-RELATED 2 3 471 IPR045218 -
Mibi08g2506 472 Coils Coil 56 76 - -
Mibi08g2506 472 Pfam LIM domain 115 169 IPR001781 -
Mibi08g2506 472 Gene3D Cysteine Rich Protein 110 188 - -
Mibi08g2506 472 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 107 140 - -
Mibi08g2506 472 SMART lim_4 114 166 IPR001781 -
Mibi08g2506 472 FunFam Protein DA1-related 1 109 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2506 Mibi-ChrMibi08 42784335 42790949 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mibi08g2506 DA1-like 2.1e-96 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi08g2506 08 42784335 42790949 Mibi08g2506 08 42784335 42790949 ECH