Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2488 ATGGCATGCCGGGACTGTGAGGCGAACTTTAGTGCGAGGAGGCCTCACTTCTATGAACTTTTTTCCTCCACATCGAGCTCCGACAGACTGAGAATACCTGCTGGATTCATCCATTTTATGGAAGGCAGGACGTCTGGTTTAGTCTCATTGACAGGTCCCAGCGGAAATACTTGGCATGTTCAATTGGTTAAGGAGGGGAATGATCTATTCCTCCATCATGGATGGCTTTCATTTTTGGAAGATCATGTTATAGAAGTTGGTGACCTTTTGGTTTTCAGATACGATGGTCACTTACACTTCACTGTGCTAGTCTTTGATCACAGAGCATGTGAGAAAGAAGCAGCATTTATATCTAAATGCAGTCAAAATTCATGCGACCTCAATCATAGTCATTCGCATAAAAGAAATAGGGAGGATAATTGTTCTTTGAATGTCGTTGCTGAAGGCTTGCTGAAGAAAATGAAAGGGAGCGCCTTTGAGAACCAAGAACTCAAGACAGGTATAGTTAGTAAAGACTTATCCTTGCTTGAGTGGGTAAAACCGATTAGAACATTCAGAGAAAAAGGAGAATCATCTAAAGAAGAAGCACAACTTAGATGCCCAGCTAGCGACGTTGCTGTGCCTTCTCAAATGGAATATAGCAACGGATGTGAAGAGGCTGCTATGCAGATTGGAAGTGGGAAAGAAGATGATCAATATGTACATAGTAGAGTTTGTCTGTCGAAGTTATCGTCTTACGATGAGAAAAGAGTAGCTCAAATGTTTACTTCGGCTTTCCCGTATTTTGTGAGAATCATGAAAAGCTTCAACATTAGTGGTTCATATACTCTGAATATCCCCTATCAATTTTCAATGGAACACCTTCCAAACTGCAAGATAAAGATTATCCTTCATAATTTAAAAGGGGAGCGCTGGACTGTTAATTCTGTGCCAACAACAAGAGTACATACGAGTCACACTCTCTGTGGTGGGTGGATGGCTTTTGTTCGTGACAATAACATTAAGGTTGGAGATATCTGCATTTTTGAACTTGTCAATGAGTGTGAATTACGTGTCCGCATTGTTGGAGTAGAAAAAGATGGGATAGACTGTCAAGTAGAGAAAGTAGCTTTTAGTAGACTTCTTACAGGTCACTCCATCAATTCCCAATTAAGTTCTCAATATATGCCGATCAAGGCCAAAGTCAATCCAAAATGCAATGGAAATGTTGATCTATCTGATAAAAAGAGGTCAAGGATGGGTCAAGATGCTGTTTTGTCTAAACCTGTCAGAGGGTCAAAGGCTTGTAAGAAGACAGGGATTTGCTCTCAGTCAAAAACTGCCCATAATAAGTTGGCTGTTCAGAGAAGACATCGAACTGAAGATGAACTGAGCTCACAGGCTAAAGCTGGTTTGAGAATGCTGTTTGCACTTGATGAACAAAGAGCAGCTCAGGCCTTCACTTCCTCATTTCCTAGTTTTGTAAAAGTTATGAAAAAGTTCAATGTCAGTGGGTCATACACTTTGAAAATCCCATATCAATTCTCTGCAGCGCATCTCCCATCCTACAAAACAGAAGTTGTGCTTCGTAATTTAAGAGGTCAATGTTGGACTGTGAACTCAGTTCCAGACACAAAAGGCAGGGCAGTGCATACCTTTTGTGGGGGATGGATGGCCTTTGTCCGTGATAATGACATCAATTTTGGAGACACGTGCATTTTCGAACTTGTTGCTCAGTATGAAATGCAAGTTTATATTTCTGGGATTGGTAAGGAAGGGCTTGACCATCCGAACAGGGAACCAAAATCTAACAGATTAGCTTTAGTTCCTTCTACCAGCAGACACTCATGCTTGTGA 1836 0.4118 MACRDCEANFSARRPHFYELFSSTSSSDRLRIPAGFIHFMEGRTSGLVSLTGPSGNTWHVQLVKEGNDLFLHHGWLSFLEDHVIEVGDLLVFRYDGHLHFTVLVFDHRACEKEAAFISKCSQNSCDLNHSHSHKRNREDNCSLNVVAEGLLKKMKGSAFENQELKTGIVSKDLSLLEWVKPIRTFREKGESSKEEAQLRCPASDVAVPSQMEYSNGCEEAAMQIGSGKEDDQYVHSRVCLSKLSSYDEKRVAQMFTSAFPYFVRIMKSFNISGSYTLNIPYQFSMEHLPNCKIKIILHNLKGERWTVNSVPTTRVHTSHTLCGGWMAFVRDNNIKVGDICIFELVNECELRVRIVGVEKDGIDCQVEKVAFSRLLTGHSINSQLSSQYMPIKAKVNPKCNGNVDLSDKKRSRMGQDAVLSKPVRGSKACKKTGICSQSKTAHNKLAVQRRHRTEDELSSQAKAGLRMLFALDEQRAAQAFTSSFPSFVKVMKKFNVSGSYTLKIPYQFSAAHLPSYKTEVVLRNLRGQCWTVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVAQYEMQVYISGIGKEGLDHPNREPKSNRLALVPSTSRHSCL 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2488 611 Pfam B3 DNA binding domain 487 572 IPR003340 GO:0003677
Mibi08g2488 611 Pfam B3 DNA binding domain 266 354 IPR003340 GO:0003677
Mibi08g2488 611 Pfam B3 DNA binding domain 22 107 IPR003340 GO:0003677
Mibi08g2488 611 CDD B3_DNA 260 354 IPR003340 GO:0003677
Mibi08g2488 611 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Mibi08g2488 611 CDD B3_DNA 485 579 IPR003340 GO:0003677
Mibi08g2488 611 Gene3D - 244 359 IPR015300 -
Mibi08g2488 611 Gene3D - 472 582 IPR015300 -
Mibi08g2488 611 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Mibi08g2488 611 SUPERFAMILY DNA-binding pseudobarrel domain 255 356 IPR015300 -
Mibi08g2488 611 CDD B3_DNA 22 106 IPR003340 GO:0003677
Mibi08g2488 611 Gene3D - 9 110 IPR015300 -
Mibi08g2488 611 ProSiteProfiles B3 DNA-binding domain profile. 262 358 IPR003340 GO:0003677
Mibi08g2488 611 SUPERFAMILY DNA-binding pseudobarrel domain 480 581 IPR015300 -
Mibi08g2488 611 ProSiteProfiles B3 DNA-binding domain profile. 487 583 IPR003340 GO:0003677
Mibi08g2488 611 SMART B3_2 262 358 IPR003340 GO:0003677
Mibi08g2488 611 SMART B3_2 487 585 IPR003340 GO:0003677
Mibi08g2488 611 SMART B3_2 17 108 IPR003340 GO:0003677
Mibi08g2488 611 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 23 360 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2488 Mibi-ChrMibi08 42628660 42632163 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2488 14 378 B3 DNA Binding Superfamily AT3G18990 24.742 5.99e-23 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mibi08g2488 B3 4e-13 CL0405