Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2483 ATGGCCATCCGGGTTACCTTTACCTATTCTGGTTATGTTGCCCGTACCTTGGTTTCGTCGCCCGTTATTCGTGTCACTCCTAACCCAAACTCAAACTTCCAGGAATGCTGGACCCGCTCTGGCATTTTCTGCCCTCGCCCTCGCCAACTGAAGCATGATGATGATGACGTTGAAACCTCCTCCGCTCTGGGTGATTATTCTAAAATCCGGCTCCTTTCGGGTTTGGTTTCGATTATGAGTTCGATTGTTGGCGTGTCTGGTTCATGTGGTGTGGGTACGGTTGTTTGCGGTATTTCCCCGTGGAAAGCTACTTCGTTTATACCCTTTTTACAGGGGTCCAAGTGGCTCCCTTGTAACCAGTCCATTCCCTCTATCACAAGCATTGTGGTGGATAAAAGCGCAACACATGGATACGGTTCCAGGGGTATTGATAAGACAAGCTGGCTTCCGCGATTTTTACGACTCTGTTCAGAGGATGCAAAAGCTGTGTTTACTGCCGCTACTGTTAGTATTCTCTTCCGATCGTTCTTGGCTGAACCGAGGTCCATTCCCTCGTCCTCAATGTACCCAACTTTGAATGTAGGTGACCGTATTTTGGCGGAGAAGGTTGGTGATCAGGTTTCCTTCTTCTTCAGAAGGCCTGATGTTTCAGACATAGTAATTTTTAAGGTGCCTCCTATTTTGCAGGAAATTGGTTATGGTTCAGGTGATGTGTTTATAAAAAGAATTGTGGCGAAGGCTGGAGACTGTGTTGAGGTTGTGCCTGAAGGTTATGTTTTTGTAATGGGAGACAATCGCAATAACAGCTTTGATTCACATAACTGGAGGGATGGACAATCTATTTTGGCCCATCCGTGGATGTTGTTCTTTGTTGGTGGCCATGCTTATTATGTACCCTTGCTAAGTTGCTATCATAAATTAGTTTTAGAATTGTGTGCACGTTTTTGTGTATGGGGACATAGCTTCTGTTTCAGGATTCTAACGTATGTGTGCTGTGTGTGTGATAGGGGTCCGCTACCTATCAAGAACATTGTTGGTAGATCCATGTTTAGATACTGGCCTCCATCCAAAGTATCCGAGACTTGCAGACTAACTCCTGCAGAAAATTGTGTGGCTATATCTTGA 1125 0.4533 MAIRVTFTYSGYVARTLVSSPVIRVTPNPNSNFQECWTRSGIFCPRPRQLKHDDDDVETSSALGDYSKIRLLSGLVSIMSSIVGVSGSCGVGTVVCGISPWKATSFIPFLQGSKWLPCNQSIPSITSIVVDKSATHGYGSRGIDKTSWLPRFLRLCSEDAKAVFTAATVSILFRSFLAEPRSIPSSSMYPTLNVGDRILAEKVGDQVSFFFRRPDVSDIVIFKVPPILQEIGYGSGDVFIKRIVAKAGDCVEVVPEGYVFVMGDNRNNSFDSHNWRDGQSILAHPWMLFFVGGHAYYVPLLSCYHKLVLELCARFCVWGHSFCFRILTYVCCVCDRGPLPIKNIVGRSMFRYWPPSKVSETCRLTPAENCVAIS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2483 374 TIGRFAM sigpep_I_bact: signal peptidase I 162 253 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi08g2483 374 Pfam Signal peptidase, peptidase S26 160 253 IPR019533 GO:0004252|GO:0006465
Mibi08g2483 374 ProSitePatterns Signal peptidases I signature 3. 259 272 IPR019758 GO:0004252|GO:0016020
Mibi08g2483 374 PANTHER SIGNAL PEPTIDASE I 254 360 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi08g2483 374 CDD S26_SPase_I 179 275 IPR019533 GO:0004252|GO:0006465
Mibi08g2483 374 ProSitePatterns Signal peptidases I serine active site. 185 192 IPR019756 GO:0004252|GO:0016020
Mibi08g2483 374 PRINTS Bacterial leader peptidase 1 (S26A) family signature 239 251 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi08g2483 374 PRINTS Bacterial leader peptidase 1 (S26A) family signature 254 273 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi08g2483 374 PRINTS Bacterial leader peptidase 1 (S26A) family signature 176 192 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mibi08g2483 374 Gene3D Umud Fragment, subunit A 173 366 - -
Mibi08g2483 374 SUPERFAMILY LexA/Signal peptidase 174 359 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2483 Mibi-ChrMibi08 42569910 42572224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2483 188 275 MADS-box Gene Family AT1G29960 32.039 2.03e-07 47.8