Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi08g2399 ATGTCTGATTTTACCAGCGCAATACCTACGCATCGGAAACTAAAGCGGCCGAAGATGGATGATCCAGAATCTACAATGACTACAGTTGCTAATTTTGTCGAGCAACTGCATGCCAACTTGTCATCACCACTTGAGAAGGAACTCATCACAGCACGTTTGCTAGGAATTGCCAGGACAAGAAAGGATGCTAGAACACTTATTGGTTCTCATGCTCAGGCAATGCCATTGTTCATAAGCATTCTCAGAAATGGAACCCCTTTAGCAAAAGTTAATGTTGCTGCCACTCTGAGTGCCCTGTGCAAAGACGAGGATTTGAGGTTAAAAGTACTTCTTGGTGGCTGTATCCCACCTTTACTGTCACTTTTGAAATCTGAAACCACAGAGGCAAGAAAGGCCGCAGCTGAAGCAATATTTGAAGTTTCCTCTGGTGGTCTTTCAGATGATCATGTTGGCATGAAAATTTTTGTCACAGAGGGTGTAGTTCCAACTTTATGGGATCAACTAAATCCAAAAAACAAGCAAGACAAAGTTGTGGAGGGTTTCATTACCGGGGCGTTGAGAAATCTGTGTGGCGACAAAGACAGATACTGGAAAGCAACATTAGAAGCAGGAAGTGTGGATATTATTGTAGGTCTCTTATCTTCAAACAATGCTGTTGCTCAGTCAAATGCAGCTTCCCTGCTGGCACGACTGGTGCTGGCTTTCAGTGATAGCATCCCCAAAGTGATAGAATCTGGTGCAGTCAATGCTTTACTTCGGCTTGTTGGTCAGCAAAATGATATTTCTGTTCGAGCAAGTGCTGCTGATGCTCTAGAGGCCCTTTCATCAAAATCAACTCAGGCTACGAGAGCCATTGTCAGTGCAGATGGTGTTCCAATTCTTATTGGGGCTATAGTTGCTCCTTCTAAAGAGTGTATGCAAGGAAACGGCCAGGAGCTGCAGGAGCATGCAACTCAAGCTTTGGCAAATATTTGTGGTGGTATGTCTTCTTTAATACTATATCTCGGAGAACTCTCCCATTCTCCTCGCCTAACTGCACCAGTTGGTGATATAATTGGAGCTCTTGCGTATACACTGATGGTGTTTGAGGACAAACATGATGTTGATGGGAAGCCTTTTGATGCAACTCAAATAGAGGATATTCTTGTGACACTATTGAAGCCTCGAGATAACAAGCTGATTCAAGATCGAGTGCTAGAGGCCATGGCTAGTCTATATGGAAACATCTATCTCTCGAAATGGCTTGAGCATGCAGATTCAAAGAAGTTTCTTATTGTACTTATTACTATGGCTGCTGCTGATGTGCAGGACTATCTTATAGTCTCCTTGACGAGTTTGTGCTGTGATAGGGTGGGAATATGGGAGGCCATAAACAGAAGAGAAGGCATCCAGTTACTTATCTCGATGTTGGGACTATCCAGTGAGCAGCATCAAGAGTATGCAGTTCGGTTGCTGTCAATTTTAATTGATCAAATTGATGACAGCAAATGGGCAATCACTGCTGCTGGTGGAATTCCTCAATTAGTTCAGTTATTAGAGACAGGATCGCAGAAGGCTAGAGAGGAAGCTGCTCATATTCTGTGGAACCTTTGCTGTCACAGTGAAGATATTCGTGCATGTGTTGAAAGTGCAGGGGCTGTACCAGCATTCTTATGGCTTTTGAAGATTGGTGGACCAAGAGGACAAGAAGCTTCTGCCATGGCACTCATTAAACTTGTGCGAATAGCTGATTCTGCTACCATTAATCAATTGTTGGCATTGCTTCTTGGGGACACTCCAGGCTCAAAGGTCCATGTAATTCGAATCTTAGGTCATGTACTTACTATGGCTTCACAGATGGACCTCCTGCAGAAGGGTTCTGCAGCTGATAAGGGGTTGAGATCTCTAGTTCAGGTTCTCAACTTAGCAGATGAGGAAACCCAGGAACATGCGGCTTCTGTCCTAGCTGATTTATTCAGTGCAAGACAAGACATTTGTGATAGCTTCCTTGCTACTGATGAAATTGTGCTTCCTTGCATGAAGCTTTTGACCAGCAAAAATCAAGTTGTTGCAACTCAGTCAGCTAGAGCACTGGGTGCTCTGTCTCGTCCAACACATAGCAGATCTGCCAATAAGATGCCTTGCATTGGAGAGCAGGATGTCAAGCCACTGATTAAATTGGCTAAAACTTCCTCTATTGTTGCAGTTGAAACTGCAGTTGCTGCGCTGGCCAATCTTCTCTTTGATACCTCTATTGCTGCTGAAGCTTTGGCAGGAGATATTGTTTCGTCTTTAACTAGAGTTCTGGCAGAAGGAACTTTAGAAGGTAAACAAAATGTATCACGTGCACTTCATCAGTTACTAAAGCATTTCCCTGTTGGTGATGTTCTCAAGGGAGATGCTCAGTACCGTTTCACTGTTCTTGCACTTGTTGATTCCTTGAGTGCTATGAACATGGATGGAGCTGATGCTGCTGATGCTTTAGAAGTAGTTTCACTGCTTGCCCGGACAAAACAGGGCAACACTTTCACTTACACTTTGTGGTCTGCATTTGCTGAAACACCATCCAATTTAAAACCTCTTGTACACTGTCTAGCTGAGGGCCCTCCCAATGTGCAGGATAAAGCAATTGAAATTCTGGCTAGACTTTGTGGTGATCAATTAGTCGTTCTTGGGGATTTGTTGGCTGCTATATCTAGATCTATTAGTTCATTAGCTGATAGATTGATGAACTCCTCCAGTTTAGAAGTCAAAGTTGGAGGGGCTTCCTTGCTTATCTGTGCTGCAAAGGAGCATAAAGAGCTGTCAATGGATGTACTTGACTCTTCTGGGCATCTAAAACCATTAATATATGCTTTAGTAGATATGCTGAAGGACTCCAGCTGTTCATTAGAGGTTGAAGGACAAACTTCTAGAAATTTTGGGTTGAAGAGTGCATTTCAGGAAGTTGATACTCCTGATATGGCCAAAGTCTCAGGCGTTACTGTTGCCTTGTGGTTACTCTCGATTATTGCTTCTTCCAATATAAAGAACAAACACACAATTATGGAAGCTGGTGGACTTGAGATTCTCTCTGAAAAGCTTGCACACCATACTTCCAATCCACAGGCAGAATCTGAGGGCACAGAAGGAATATGGATAAGTGCCTTGCTCCTGGCCATTTTGTTTCAAGATGGAATCGTTGTTCTATCTCCGGTAACAATGCACATTTTACCGTCTCTCACTCATTTACTACGGTCTGAAGAAGTGGCATATAAATATATTTCTGCCCAGGCTGTGGCTAGTCTTGTTTGTAACGGCAATAAGGGAATAGCTCTTGCTGTCGCAAACTCTGGTGCTGTTTCCGGATTGATTTCTATGATTGGCTATATAGAGTCAGATATGCTAAAAATCATTGCTTTATCAGATAAATTTTCACTGGTGCGAAATCCTGATCAAGTGGTTTTGAATCACCTTTTTGAAATTGAAGATATAAGATTGGGGTCTACTGCACGGAAATCTATACCTCTCTTGGTGGATCTATTGAGACCAATTCCAGAAAGGCCTAGTGCTCCACCAGTCGCTGTTAAACTCTTGACATGCATTGCAGATGGAAGCGACGCAAACAAAATAATCATGGCTGAAACAGGCGCTGTGGAAGCTTTGACAAAATACCTGTCTTTGAGCCCTCAAGACTCAACTGAGGCCAGTATTTCTGAGTTATTAAGAATACTATTTTGCAATTCTGACCTTATCAAATATGATGCATCAGCAAGTTCTCTGAACCAACTCATCGCTGTTTTGCGTCTTGGATCAAGAAAATCTAGATATAGTGCAGCAAGAGCACTTTATGAACTTTTTGACGCTGAGAGTATTAGAAACTCGGAATTAGCTAAACAGGCCATTCAACCTTTGGTTGACATGCTTAATACAACGACAGGTAGCGAGCAGGAGGCTGCTCTAATTGCATTAATCAAATTAACATCTGAAAATTCTTCAAAAGCATCTTTTTTTGCTGATGTAGAAGGGAACCCACTTCAGAGTTTATACCAGATATTGTCTTCCGCTTCATCCTTGGAACTGAAGAGCAATGCTGCGCAACTTTGCTTTGTCCTTTTTGATAGCGGAAAGATTAGAGCTGATCCACTTGCCTCGGAATTCATTCAACCACTTGTTTCACTGATACAGTCTGATTCTGGCCTGGCAAGAGAAGCTGGGGTTTTTGCTTTTGAGAGATTGTTGGAAGATGAACAGCATGCGGAGCTTGCAGTAGCCTACAATGTTGTCAATCTCCTTGTTAGTTTGGTTGTGGGTTCCAGCTATCAGCTGATTGAGGCTACCATATCTGCTCTCATCAAATTGGGCAAAGATAGGACGCCATGCAAACTAGACATGGTTGAAGCTGGTGTTCTTGATAATTGTCTCAAGTTACTTGAATCTGCACCCAGCTCATTGTGCTCCACAATCGCTGAACTATTCCGCATTTTGACAAATAGCAGTGCTATTGCAAGAAGTTCAGCTGCTGCAGAAATTGTAGAACCCCTTTTTCAAGTTTTGCTTCGTCTAGATTTTGACTTGTGGGGACAGCATAGTGCCTTACAAGCTCTTGTAAATATATTGGAGAAGCCACAAAGTCTTGCAACCTTAAAACTAACTCCTAGCCAAGTTATAGAGCCCTTAATCTCATTCCTGGAATCCCCATCCCAAGCCATTCAGCAGCTGGGCACTGAACTGTTGTCCCACCTTCTTGCACAGGAACATTTTCAGAAAGATATTAAAACAAAGAATGCTGTTGTTCCTCTTGTTCAACTTGCAGGAATTGGAATACTGAACTTACAGCAAACAGCGATAAAAGCATTGGAGAAAATCTCCAAAAGATGGCCAAAAGCTGTTGCTGATGCAGGAGGAATTTTTGAGCTTGCAAAGGTTATTATTCAAGATGATCCCCAGCCACCACATACACTTTGGGAATCAGCGGCTTTGGTTCTTTCTAACGTACTATGTTCTAATGCTGATTATTATTTTAAAGTTCCTGTGGTAGTTCTTGTAAAACTGTTGCACTCAACAACTGAGAGTACCATTAGCATAGCTCTTAATGGCCTAATAATTCATGAAAGAAGTGATGCTTCAAGCGCTGAACAGATGATGGAAGCTGAAGCTATAGATGTTCTGTTAGATCTTTTAAGATCTCATCACTGCGAAGAAGAATCTGGCAGATTACTTGAAGCTTTATTCAACAATGTGAAAATAAGAGAGATGAAGGCATCTAAGTATGCAATAGCACCATTATCTCAGTATCTGTTAGATCCACAGACCAGATCACCGTCTACCAAACTTCTTGTTGCTTTAGCTTTGGGAAATATATCCCAACATGAAGGACATGCTAGAGCCAGTGGTTCTGTCTCTGCTTGTCGTGCATTGGTAAGTTTACTTGAGGATCAGCCAACTGAAGAAATGGTGATGGTTGCTATTTGTGCGTTGCAAAACTTTGTCATGAACAGCAGGACTAATAGGCGAGCTGTTGCAGAAGCTGGTGGCATACTGGTGATTCAGGAATTACTGCTGTCTACAAATCTAGAAGTTGCAGGACAAGCAGCATTGCTGATCCGATTTTTATTTTCTACACACACACTACAAGAATATGTGTCAAATGAGCTGATCAGATCTCTGACAGCTGCTCTGGAAAGAGAGTTGTGGTCAACTGCCACAATCAATGAAGAGGTTTTAAAAACTTTGCATGTCATATTCACGAACTTTCCTAAGCTCCATGTGTCTGAAGCAGCAACTCTTTGCATTCCTCATTTGGTCGGGGCGCTCAAATCTGGTAGTGAAGTGGCTCAAGACTCTGTACTAGATACCTTGTGCTTGCTAAGACATTCTTGGTCAACCATGCCAATAGATATATCGAAATCTCAGGCTATGATCGCTGCTGAAGCCATTCCCATTCTGCAAATGCTCATGAAAACCTGTCCCCCATATTTCCATGAGAGAGCAGATAGTCTTCTGCATTGCTTACCAGGTTGTTTGACTGTCACCATTAAACGTGGAAGCAACCTCAAACAAACTATGGGAAGTACAAATGCATATTGCCAGTTAACAATAGGCAATGGTCCTCCCAAACTAACCAAGGTTGTGAGTCACAGTATTTCGCCAGAATGGAAAGAAGGATTCACATGGGCATTTGATGTGCCTCCAAAGGGCCAGAAGCTGTACATCATATGCAAAAGCAAGAATACTTTTGGCAAGGCAACTCTTGGAAGAGTTACTATACAGATTGATAAAGTGGTAAACGAGGGAGTTTACAGTGGAATATTCAGTCTTAATCACGACAGAAACAAAGATGGTTCTTCCCGAACTCTTGAAATTGAGATTATATGGTCCAACAGGATCTCTGATGACGACCTTTGA 6366 0.4233 MSDFTSAIPTHRKLKRPKMDDPESTMTTVANFVEQLHANLSSPLEKELITARLLGIARTRKDARTLIGSHAQAMPLFISILRNGTPLAKVNVAATLSALCKDEDLRLKVLLGGCIPPLLSLLKSETTEARKAAAEAIFEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDKVVEGFITGALRNLCGDKDRYWKATLEAGSVDIIVGLLSSNNAVAQSNAASLLARLVLAFSDSIPKVIESGAVNALLRLVGQQNDISVRASAADALEALSSKSTQATRAIVSADGVPILIGAIVAPSKECMQGNGQELQEHATQALANICGGMSSLILYLGELSHSPRLTAPVGDIIGALAYTLMVFEDKHDVDGKPFDATQIEDILVTLLKPRDNKLIQDRVLEAMASLYGNIYLSKWLEHADSKKFLIVLITMAAADVQDYLIVSLTSLCCDRVGIWEAINRREGIQLLISMLGLSSEQHQEYAVRLLSILIDQIDDSKWAITAAGGIPQLVQLLETGSQKAREEAAHILWNLCCHSEDIRACVESAGAVPAFLWLLKIGGPRGQEASAMALIKLVRIADSATINQLLALLLGDTPGSKVHVIRILGHVLTMASQMDLLQKGSAADKGLRSLVQVLNLADEETQEHAASVLADLFSARQDICDSFLATDEIVLPCMKLLTSKNQVVATQSARALGALSRPTHSRSANKMPCIGEQDVKPLIKLAKTSSIVAVETAVAALANLLFDTSIAAEALAGDIVSSLTRVLAEGTLEGKQNVSRALHQLLKHFPVGDVLKGDAQYRFTVLALVDSLSAMNMDGADAADALEVVSLLARTKQGNTFTYTLWSAFAETPSNLKPLVHCLAEGPPNVQDKAIEILARLCGDQLVVLGDLLAAISRSISSLADRLMNSSSLEVKVGGASLLICAAKEHKELSMDVLDSSGHLKPLIYALVDMLKDSSCSLEVEGQTSRNFGLKSAFQEVDTPDMAKVSGVTVALWLLSIIASSNIKNKHTIMEAGGLEILSEKLAHHTSNPQAESEGTEGIWISALLLAILFQDGIVVLSPVTMHILPSLTHLLRSEEVAYKYISAQAVASLVCNGNKGIALAVANSGAVSGLISMIGYIESDMLKIIALSDKFSLVRNPDQVVLNHLFEIEDIRLGSTARKSIPLLVDLLRPIPERPSAPPVAVKLLTCIADGSDANKIIMAETGAVEALTKYLSLSPQDSTEASISELLRILFCNSDLIKYDASASSLNQLIAVLRLGSRKSRYSAARALYELFDAESIRNSELAKQAIQPLVDMLNTTTGSEQEAALIALIKLTSENSSKASFFADVEGNPLQSLYQILSSASSLELKSNAAQLCFVLFDSGKIRADPLASEFIQPLVSLIQSDSGLAREAGVFAFERLLEDEQHAELAVAYNVVNLLVSLVVGSSYQLIEATISALIKLGKDRTPCKLDMVEAGVLDNCLKLLESAPSSLCSTIAELFRILTNSSAIARSSAAAEIVEPLFQVLLRLDFDLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQKDIKTKNAVVPLVQLAGIGILNLQQTAIKALEKISKRWPKAVADAGGIFELAKVIIQDDPQPPHTLWESAALVLSNVLCSNADYYFKVPVVVLVKLLHSTTESTISIALNGLIIHERSDASSAEQMMEAEAIDVLLDLLRSHHCEEESGRLLEALFNNVKIREMKASKYAIAPLSQYLLDPQTRSPSTKLLVALALGNISQHEGHARASGSVSACRALVSLLEDQPTEEMVMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSTNLEVAGQAALLIRFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFTNFPKLHVSEAATLCIPHLVGALKSGSEVAQDSVLDTLCLLRHSWSTMPIDISKSQAMIAAEAIPILQMLMKTCPPYFHERADSLLHCLPGCLTVTIKRGSNLKQTMGSTNAYCQLTIGNGPPKLTKVVSHSISPEWKEGFTWAFDVPPKGQKLYIICKSKNTFGKATLGRVTIQIDKVVNEGVYSGIFSLNHDRNKDGSSRTLEIEIIWSNRISDDDL 2121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi08g2399 2121 Pfam C2 domain 1994 2093 IPR000008 -
Mibi08g2399 2121 Gene3D - 617 791 IPR011989 -
Mibi08g2399 2121 SUPERFAMILY ARM repeat 434 787 IPR016024 -
Mibi08g2399 2121 Gene3D C2 domain 1994 2119 IPR035892 -
Mibi08g2399 2121 SUPERFAMILY ARM repeat 1596 1991 IPR016024 -
Mibi08g2399 2121 SUPERFAMILY ARM repeat 74 1572 IPR016024 -
Mibi08g2399 2121 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 503 545 IPR000225 GO:0005515
Mibi08g2399 2121 Gene3D - 1147 1332 IPR011989 -
Mibi08g2399 2121 Gene3D - 350 616 IPR011989 -
Mibi08g2399 2121 SUPERFAMILY ARM repeat 260 447 IPR016024 -
Mibi08g2399 2121 SUPERFAMILY ARM repeat 846 1115 IPR016024 -
Mibi08g2399 2121 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 246 290 IPR000225 GO:0005515
Mibi08g2399 2121 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1992 2097 IPR035892 -
Mibi08g2399 2121 Gene3D - 837 1146 IPR011989 -
Mibi08g2399 2121 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 12 2115 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Mibi08g2399 2121 Gene3D - 147 346 IPR011989 -
Mibi08g2399 2121 Gene3D - 1596 1993 IPR011989 -
Mibi08g2399 2121 Gene3D - 19 146 IPR011989 -
Mibi08g2399 2121 SMART C2_3c 1994 2090 IPR000008 -
Mibi08g2399 2121 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1788 1831 IPR000225 GO:0005515
Mibi08g2399 2121 MobiDBLite consensus disorder prediction 1 23 - -
Mibi08g2399 2121 CDD C2 1995 2085 - -
Mibi08g2399 2121 Pfam Armadillo/beta-catenin-like repeat 496 531 IPR000225 GO:0005515
Mibi08g2399 2121 Gene3D - 1333 1592 IPR011989 -
Mibi08g2399 2121 ProSiteProfiles C2 domain profile. 1974 2091 IPR000008 -
Mibi08g2399 2121 SMART arm_5 448 490 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 742 782 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 147 191 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 534 574 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 1402 1442 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 655 696 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 614 653 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 1732 1776 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 1444 1484 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 278 326 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 492 532 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 102 142 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 235 276 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 701 741 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 1192 1232 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 192 233 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 1820 1860 IPR000225 GO:0005515
Mibi08g2399 2121 SMART arm_5 1529 1570 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi08g2399 Mibi-ChrMibi08 41725181 41733569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi08g2399 463 691 U-box Gene Family AT2G23140 29.536 4.45e-11 66.2